Cacao yellow vein banding virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1P8SRL3|A0A1P8SRL3_9VIRU Uncharacterized protein OS=Cacao yellow vein banding virus OX=2169726 PE=4 SV=1
MM1 pKa = 7.32EE2 pKa = 5.66RR3 pKa = 11.84SSSHH7 pKa = 6.89RR8 pKa = 11.84MLTPALPXNLLEE20 pKa = 4.07DD21 pKa = 4.05HH22 pKa = 6.24QWYY25 pKa = 8.72LQQASNLPQDD35 pKa = 3.97MQLHH39 pKa = 5.51XLNEE43 pKa = 4.27KK44 pKa = 10.32GAEE47 pKa = 3.96DD48 pKa = 3.73CLSYY52 pKa = 11.15KK53 pKa = 10.29FXEE56 pKa = 4.45VSKK59 pKa = 10.53QLQEE63 pKa = 3.82FRR65 pKa = 11.84TMVDD69 pKa = 2.71RR70 pKa = 11.84SLAYY74 pKa = 7.73YY75 pKa = 9.55TRR77 pKa = 11.84ISTKK81 pKa = 10.49DD82 pKa = 3.21NYY84 pKa = 11.43AGDD87 pKa = 3.68HH88 pKa = 6.4KK89 pKa = 10.97EE90 pKa = 3.88ALEE93 pKa = 3.96YY94 pKa = 10.81AQGEE98 pKa = 4.51ILTALTALEE107 pKa = 3.99KK108 pKa = 10.73AKK110 pKa = 10.83CIFIKK115 pKa = 10.48EE116 pKa = 4.16RR117 pKa = 11.84GHH119 pKa = 4.6VTVLRR124 pKa = 11.84PP125 pKa = 3.23

Molecular weight: 14.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1P8SRK1|A0A1P8SRK1_9VIRU Reverse transcriptase OS=Cacao yellow vein banding virus OX=2169726 PE=4 SV=1
MM1 pKa = 7.51SLADD5 pKa = 4.07KK6 pKa = 10.7KK7 pKa = 10.93ADD9 pKa = 3.65PSFVEE14 pKa = 5.98AITQIQRR21 pKa = 11.84LGEE24 pKa = 4.05GAGFEE29 pKa = 4.36VSSGATASKK38 pKa = 10.48GISTIISQLNVLVYY52 pKa = 10.47QITALHH58 pKa = 5.67QKK60 pKa = 9.75VDD62 pKa = 3.57ALDD65 pKa = 3.53ARR67 pKa = 11.84VRR69 pKa = 11.84AIQAGKK75 pKa = 8.37ATDD78 pKa = 3.71YY79 pKa = 11.43SDD81 pKa = 3.86QLEE84 pKa = 4.73KK85 pKa = 10.52LTADD89 pKa = 4.78LSNLSLGTATTKK101 pKa = 10.48PVVKK105 pKa = 10.45KK106 pKa = 10.35KK107 pKa = 9.39VNKK110 pKa = 9.79VYY112 pKa = 10.08FYY114 pKa = 11.06KK115 pKa = 10.61DD116 pKa = 3.17PKK118 pKa = 10.77QILQEE123 pKa = 4.63EE124 pKa = 4.49KK125 pKa = 10.37TKK127 pKa = 9.78WQSQKK132 pKa = 11.26

Molecular weight: 14.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

2388

125

1958

597.0

67.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.077 ± 0.661

1.508 ± 0.277

5.151 ± 0.165

7.58 ± 0.753

3.643 ± 0.389

5.025 ± 1.28

2.429 ± 0.424

6.072 ± 0.825

6.91 ± 1.024

8.752 ± 3.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.136 ± 0.44

4.648 ± 0.548

5.318 ± 1.321

5.402 ± 0.593

5.821 ± 0.604

6.449 ± 0.294

5.653 ± 0.323

5.528 ± 0.529

1.34 ± 0.441

3.224 ± 0.321
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski