Ottowia oryzae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ottowia

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3420 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S0MAT3|A0A2S0MAT3_9BURK Uncharacterized protein OS=Ottowia oryzae OX=2109914 GN=C6570_01140 PE=4 SV=1
MM1 pKa = 7.24SAVAEE6 pKa = 4.89AIQTPSAMPDD16 pKa = 3.28AIVFTDD22 pKa = 3.72SAAAKK27 pKa = 10.02VADD30 pKa = 5.45LIAEE34 pKa = 4.31EE35 pKa = 4.82GNPDD39 pKa = 2.99LKK41 pKa = 11.13LRR43 pKa = 11.84VFVQGGGCSGFQYY56 pKa = 10.94GFTFDD61 pKa = 5.2EE62 pKa = 4.73IANDD66 pKa = 4.8DD67 pKa = 4.18DD68 pKa = 3.87TTMTKK73 pKa = 10.62NGVSLLIDD81 pKa = 3.54AMSYY85 pKa = 10.32QYY87 pKa = 11.5LVGAEE92 pKa = 3.79IDD94 pKa = 3.91YY95 pKa = 11.36KK96 pKa = 11.19EE97 pKa = 4.67DD98 pKa = 3.23LQGAQFVIKK107 pKa = 10.44NPNAQTTCGCGSSFAVAEE125 pKa = 4.22

Molecular weight: 13.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S0MJG5|A0A2S0MJG5_9BURK HIT family protein OS=Ottowia oryzae OX=2109914 GN=C6570_04160 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.25QPSKK9 pKa = 7.79TRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.79GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3420

0

3420

1104964

37

2077

323.1

34.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.828 ± 0.065

0.861 ± 0.013

5.238 ± 0.026

4.824 ± 0.036

3.275 ± 0.026

8.529 ± 0.035

2.216 ± 0.021

3.954 ± 0.032

3.119 ± 0.04

10.558 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.448 ± 0.021

2.511 ± 0.024

5.719 ± 0.036

4.256 ± 0.028

6.855 ± 0.039

5.064 ± 0.026

5.276 ± 0.031

7.71 ± 0.036

1.582 ± 0.021

2.178 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski