Modestobacter caceresii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Geodermatophilales; Geodermatophilaceae; Modestobacter

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3847 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A098Y9H3|A0A098Y9H3_9ACTN Methylase OS=Modestobacter caceresii OX=1522368 GN=IN07_08945 PE=4 SV=1
MM1 pKa = 7.35NSVSRR6 pKa = 11.84SGRR9 pKa = 11.84RR10 pKa = 11.84ALVATAGITATALALSACGGDD31 pKa = 4.16DD32 pKa = 3.7GDD34 pKa = 4.7GGGSGGGDD42 pKa = 3.33SLIIGTTDD50 pKa = 3.59KK51 pKa = 10.43ITTIDD56 pKa = 3.49PAGSYY61 pKa = 11.17DD62 pKa = 3.54NGSFAVMNQVYY73 pKa = 8.97PFLMNTPLGSPDD85 pKa = 3.76VEE87 pKa = 3.9PDD89 pKa = 3.01IAEE92 pKa = 4.25SAEE95 pKa = 4.09FTSPTEE101 pKa = 3.89YY102 pKa = 10.56TVTLKK107 pKa = 11.03DD108 pKa = 3.31GLTFANGNEE117 pKa = 4.04LTASDD122 pKa = 4.03VKK124 pKa = 10.89FSFDD128 pKa = 3.5RR129 pKa = 11.84MVAINDD135 pKa = 3.42EE136 pKa = 4.45SGPASLLYY144 pKa = 10.33NLEE147 pKa = 4.04STEE150 pKa = 4.16VVDD153 pKa = 3.97DD154 pKa = 3.79TTVVFNLKK162 pKa = 10.62SPDD165 pKa = 3.66DD166 pKa = 3.65QVFPQILSSPAGPIVDD182 pKa = 3.9EE183 pKa = 5.08DD184 pKa = 4.14VFAADD189 pKa = 5.75ALTTDD194 pKa = 3.78QEE196 pKa = 4.56IVDD199 pKa = 4.23GNAFAGPYY207 pKa = 10.29AITNYY212 pKa = 10.11DD213 pKa = 3.34QNNLVSYY220 pKa = 9.39EE221 pKa = 4.0AFEE224 pKa = 5.05GYY226 pKa = 9.63QGLLGAPEE234 pKa = 4.23TEE236 pKa = 4.55TVNVRR241 pKa = 11.84YY242 pKa = 9.58YY243 pKa = 11.63ADD245 pKa = 3.67ASNLKK250 pKa = 10.44LDD252 pKa = 3.86VQEE255 pKa = 4.86GNVDD259 pKa = 3.42VAFRR263 pKa = 11.84SLTATDD269 pKa = 3.86VEE271 pKa = 4.73DD272 pKa = 4.47LRR274 pKa = 11.84GDD276 pKa = 3.56DD277 pKa = 3.67SVNVVDD283 pKa = 5.57GPGGEE288 pKa = 3.65IRR290 pKa = 11.84YY291 pKa = 8.28ITFNFNTQPYY301 pKa = 9.66GATTPEE307 pKa = 4.22ADD309 pKa = 3.52PAKK312 pKa = 10.57ALAVRR317 pKa = 11.84QAAAHH322 pKa = 6.45LIDD325 pKa = 4.53RR326 pKa = 11.84EE327 pKa = 4.06EE328 pKa = 4.85LADD331 pKa = 3.59QVYY334 pKa = 10.44KK335 pKa = 10.17GTYY338 pKa = 7.53TPLYY342 pKa = 9.34SYY344 pKa = 10.97VPEE347 pKa = 4.54GLTGAVEE354 pKa = 4.13PLLEE358 pKa = 4.61KK359 pKa = 11.22YY360 pKa = 10.72GDD362 pKa = 3.78GSGAPDD368 pKa = 3.58AEE370 pKa = 4.26AAAQVLQAAGVQTPVEE386 pKa = 4.26LNLQYY391 pKa = 11.47SNDD394 pKa = 3.55HH395 pKa = 6.32YY396 pKa = 11.31GPSSGDD402 pKa = 3.07EE403 pKa = 3.82YY404 pKa = 11.92ALIKK408 pKa = 10.69DD409 pKa = 3.71QLEE412 pKa = 4.2SSGLFTVNLQTTEE425 pKa = 3.68WVQYY429 pKa = 10.88SEE431 pKa = 5.65DD432 pKa = 3.69RR433 pKa = 11.84TADD436 pKa = 3.37VYY438 pKa = 10.68PAYY441 pKa = 10.26QLGWFPDD448 pKa = 3.67YY449 pKa = 11.48SDD451 pKa = 4.11ADD453 pKa = 3.57NYY455 pKa = 8.96LTPFFLTEE463 pKa = 3.86NFLGNHH469 pKa = 5.69YY470 pKa = 10.65SDD472 pKa = 5.11PEE474 pKa = 4.26VNDD477 pKa = 5.67LILQQATTTDD487 pKa = 3.61PAEE490 pKa = 4.2RR491 pKa = 11.84EE492 pKa = 3.98ALIEE496 pKa = 4.02QIQGQVADD504 pKa = 4.97DD505 pKa = 4.92LSTLPYY511 pKa = 10.41LQGAQVAVTGTDD523 pKa = 3.25VQGAEE528 pKa = 4.25DD529 pKa = 3.78TLDD532 pKa = 3.46PSFKK536 pKa = 10.15FRR538 pKa = 11.84YY539 pKa = 9.04GALSKK544 pKa = 11.17GG545 pKa = 3.56

Molecular weight: 58.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A098YDQ2|A0A098YDQ2_9ACTN Bifunctional purine biosynthesis protein PurH OS=Modestobacter caceresii OX=1522368 GN=purH PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 8.98RR4 pKa = 11.84TFQPNTRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.83THH17 pKa = 5.18GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.23GRR40 pKa = 11.84NKK42 pKa = 10.44LSAA45 pKa = 3.84

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3847

0

3847

1186502

37

2005

308.4

32.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.24 ± 0.066

0.666 ± 0.01

6.286 ± 0.034

5.636 ± 0.031

2.563 ± 0.023

9.522 ± 0.031

2.037 ± 0.021

2.83 ± 0.034

1.424 ± 0.026

10.797 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.648 ± 0.015

1.471 ± 0.019

6.03 ± 0.033

2.904 ± 0.02

7.839 ± 0.045

4.891 ± 0.024

6.128 ± 0.027

9.86 ± 0.038

1.484 ± 0.018

1.746 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski