Porcine circovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; unclassified Circovirus

Average proteome isoelectric point is 8.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M1LLC3|M1LLC3_9CIRC Truncated Rep protein OS=Porcine circovirus OX=46221 GN=rep PE=4 SV=1
MM1 pKa = 7.74PSKK4 pKa = 10.67KK5 pKa = 9.86SGRR8 pKa = 11.84SGPQPHH14 pKa = 6.51KK15 pKa = 10.37RR16 pKa = 11.84WVFTLNNPSEE26 pKa = 4.33DD27 pKa = 3.36EE28 pKa = 3.99RR29 pKa = 11.84KK30 pKa = 10.05KK31 pKa = 10.56IRR33 pKa = 11.84EE34 pKa = 4.09LPISLFDD41 pKa = 3.56YY42 pKa = 9.9FIVGEE47 pKa = 4.19EE48 pKa = 4.25GNEE51 pKa = 4.12EE52 pKa = 3.98GRR54 pKa = 11.84TPHH57 pKa = 6.16LQGFANFVKK66 pKa = 10.4KK67 pKa = 7.73QTFNKK72 pKa = 8.58VKK74 pKa = 8.5WYY76 pKa = 10.26FGARR80 pKa = 11.84CHH82 pKa = 6.85IEE84 pKa = 3.87KK85 pKa = 10.86AKK87 pKa = 9.75GTDD90 pKa = 3.47QQNKK94 pKa = 8.81EE95 pKa = 4.19YY96 pKa = 10.41CSKK99 pKa = 10.8EE100 pKa = 3.71GNLLIEE106 pKa = 4.81CGAPRR111 pKa = 11.84SQGQRR116 pKa = 11.84SDD118 pKa = 3.49LSTAVSTLLEE128 pKa = 4.52SGSLVTVAEE137 pKa = 4.06QHH139 pKa = 5.99PVTFVRR145 pKa = 11.84NFRR148 pKa = 11.84GLAEE152 pKa = 4.1LLKK155 pKa = 11.06VSGKK159 pKa = 7.43MHH161 pKa = 6.06QEE163 pKa = 3.46WW164 pKa = 3.41

Molecular weight: 18.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M1LLC3|M1LLC3_9CIRC Truncated Rep protein OS=Porcine circovirus OX=46221 GN=rep PE=4 SV=1
MM1 pKa = 7.74PSKK4 pKa = 10.67KK5 pKa = 9.86SGRR8 pKa = 11.84SGPQPHH14 pKa = 6.51KK15 pKa = 10.37RR16 pKa = 11.84WVFTLNNPSEE26 pKa = 4.33DD27 pKa = 3.36EE28 pKa = 3.99RR29 pKa = 11.84KK30 pKa = 10.05KK31 pKa = 10.56IRR33 pKa = 11.84EE34 pKa = 4.09LPISLFDD41 pKa = 3.56YY42 pKa = 9.9FIVGEE47 pKa = 4.19EE48 pKa = 4.25GNEE51 pKa = 4.12EE52 pKa = 3.98GRR54 pKa = 11.84TPHH57 pKa = 6.16LQGFANFVKK66 pKa = 10.4KK67 pKa = 7.73QTFNKK72 pKa = 8.58VKK74 pKa = 8.5WYY76 pKa = 10.26FGARR80 pKa = 11.84CHH82 pKa = 6.85IEE84 pKa = 3.87KK85 pKa = 10.86AKK87 pKa = 9.75GTDD90 pKa = 3.47QQNKK94 pKa = 8.81EE95 pKa = 4.19YY96 pKa = 10.41CSKK99 pKa = 10.8EE100 pKa = 3.71GNLLIEE106 pKa = 4.81CGAPRR111 pKa = 11.84SQGQRR116 pKa = 11.84SDD118 pKa = 3.49LSTAVSTLLEE128 pKa = 4.52SGSLVTVAEE137 pKa = 4.06QHH139 pKa = 5.99PVTFVRR145 pKa = 11.84NFRR148 pKa = 11.84GLAEE152 pKa = 4.1LLKK155 pKa = 11.06VSGKK159 pKa = 7.43MHH161 pKa = 6.06QEE163 pKa = 3.46WW164 pKa = 3.41

Molecular weight: 18.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

164

164

164

164.0

18.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.268 ± 0.0

1.829 ± 0.0

2.439 ± 0.0

9.146 ± 0.0

5.488 ± 0.0

8.537 ± 0.0

3.049 ± 0.0

3.049 ± 0.0

9.146 ± 0.0

7.927 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.22 ± 0.0

4.878 ± 0.0

4.878 ± 0.0

5.488 ± 0.0

6.098 ± 0.0

7.927 ± 0.0

4.878 ± 0.0

6.098 ± 0.0

1.829 ± 0.0

1.829 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski