Shahe narna-like virus 7

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 5.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KIK7|A0A1L3KIK7_9VIRU RNA-dependent RNA polymerase OS=Shahe narna-like virus 7 OX=1923435 PE=4 SV=1
MM1 pKa = 7.68PSWLFTSHH9 pKa = 5.88EE10 pKa = 4.32SVRR13 pKa = 11.84IGMTVLTISSGFNLPVSVNLDD34 pKa = 3.81PIMTPSKK41 pKa = 10.39SIPSSMEE48 pKa = 3.11SWEE51 pKa = 3.82IDD53 pKa = 3.63LVCRR57 pKa = 11.84FLGIKK62 pKa = 9.68EE63 pKa = 4.62EE64 pKa = 4.14YY65 pKa = 10.36VEE67 pKa = 3.91WFMFHH72 pKa = 7.14HH73 pKa = 5.95STKK76 pKa = 10.41KK77 pKa = 10.67GPNGQALMSSTHH89 pKa = 7.21DD90 pKa = 3.65FTLMPSWLKK99 pKa = 10.84NKK101 pKa = 9.77LMSLAGVGLKK111 pKa = 9.85QCFDD115 pKa = 5.1LIDD118 pKa = 4.04SVSMNGISVNSWWNRR133 pKa = 11.84IYY135 pKa = 10.32PVRR138 pKa = 11.84SSTISKK144 pKa = 8.41LTGMSDD150 pKa = 3.45KK151 pKa = 10.8EE152 pKa = 4.46GKK154 pKa = 7.96TSVMGVVDD162 pKa = 3.97YY163 pKa = 10.35WSQTALKK170 pKa = 8.66PLHH173 pKa = 6.41DD174 pKa = 3.71TLMRR178 pKa = 11.84ILSGIGPDD186 pKa = 3.79CTHH189 pKa = 7.09DD190 pKa = 3.44QQSFLTKK197 pKa = 9.89VPSSGVTFYY206 pKa = 11.21SYY208 pKa = 11.81DD209 pKa = 3.41LTNATDD215 pKa = 5.34SMPLWLQGEE224 pKa = 4.61IISRR228 pKa = 11.84MIGKK232 pKa = 9.22DD233 pKa = 3.11RR234 pKa = 11.84AEE236 pKa = 4.01DD237 pKa = 3.29WKK239 pKa = 11.19DD240 pKa = 3.11ILVKK244 pKa = 10.93EE245 pKa = 4.14EE246 pKa = 4.46FSLKK250 pKa = 10.1GHH252 pKa = 5.72PAKK255 pKa = 10.47IKK257 pKa = 10.37FSAGQPMGAYY267 pKa = 10.15SSWPSMALTHH277 pKa = 6.21HH278 pKa = 7.25AIVQLAWISLGNKK291 pKa = 9.66SPTRR295 pKa = 11.84DD296 pKa = 3.54YY297 pKa = 11.85VLLGDD302 pKa = 6.2DD303 pKa = 3.49MVIWNDD309 pKa = 3.38KK310 pKa = 10.56LAMSYY315 pKa = 8.44RR316 pKa = 11.84TLLSSLDD323 pKa = 3.77MPISDD328 pKa = 3.73QKK330 pKa = 8.95THH332 pKa = 6.42ISGSTFEE339 pKa = 4.73FCKK342 pKa = 10.24SWFVNGVEE350 pKa = 4.24VTGFSVPGLWEE361 pKa = 3.99VSSSYY366 pKa = 11.51SKK368 pKa = 10.75LANFLEE374 pKa = 4.55NQEE377 pKa = 4.1SHH379 pKa = 5.15GWKK382 pKa = 10.02PSDD385 pKa = 3.55ASAIPLIMSLYY396 pKa = 9.69NCLGLHH402 pKa = 5.43SQGKK406 pKa = 8.84SVYY409 pKa = 10.1KK410 pKa = 10.51LYY412 pKa = 10.4TVFQTLVKK420 pKa = 9.68TKK422 pKa = 9.52VTGEE426 pKa = 3.99YY427 pKa = 9.57STMAKK432 pKa = 10.65AMTEE436 pKa = 3.82AFRR439 pKa = 11.84WPFYY443 pKa = 8.21EE444 pKa = 3.93TSNEE448 pKa = 3.54IFASILGKK456 pKa = 9.84MKK458 pKa = 10.52EE459 pKa = 4.05EE460 pKa = 3.98QVWKK464 pKa = 10.71DD465 pKa = 3.45MEE467 pKa = 4.41SLQTNVYY474 pKa = 10.02LFHH477 pKa = 8.04DD478 pKa = 4.51EE479 pKa = 4.11FNKK482 pKa = 10.33RR483 pKa = 11.84MSTVNPLWASEE494 pKa = 4.4SYY496 pKa = 8.59KK497 pKa = 9.71TAYY500 pKa = 8.48TEE502 pKa = 3.95RR503 pKa = 11.84VPMLIMAEE511 pKa = 4.13YY512 pKa = 8.96LTMEE516 pKa = 4.58LEE518 pKa = 4.35EE519 pKa = 5.01KK520 pKa = 10.99LMILTGDD527 pKa = 3.66NSSDD531 pKa = 3.45EE532 pKa = 4.12YY533 pKa = 11.42QEE535 pKa = 5.79LIFNEE540 pKa = 4.23SLGSYY545 pKa = 9.84KK546 pKa = 10.4LSKK549 pKa = 10.65HH550 pKa = 5.26FFGLKK555 pKa = 10.35DD556 pKa = 3.41EE557 pKa = 4.83ASSVRR562 pKa = 11.84DD563 pKa = 3.14LSRR566 pKa = 11.84LVKK569 pKa = 10.1PLINKK574 pKa = 9.2VSEE577 pKa = 4.8IINKK581 pKa = 9.58SDD583 pKa = 3.13PTTSVILTTTEE594 pKa = 3.58QMFVKK599 pKa = 9.87DD600 pKa = 3.54TATFGPP606 pKa = 4.18

Molecular weight: 68.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KIK7|A0A1L3KIK7_9VIRU RNA-dependent RNA polymerase OS=Shahe narna-like virus 7 OX=1923435 PE=4 SV=1
MM1 pKa = 7.68PSWLFTSHH9 pKa = 5.88EE10 pKa = 4.32SVRR13 pKa = 11.84IGMTVLTISSGFNLPVSVNLDD34 pKa = 3.81PIMTPSKK41 pKa = 10.39SIPSSMEE48 pKa = 3.11SWEE51 pKa = 3.82IDD53 pKa = 3.63LVCRR57 pKa = 11.84FLGIKK62 pKa = 9.68EE63 pKa = 4.62EE64 pKa = 4.14YY65 pKa = 10.36VEE67 pKa = 3.91WFMFHH72 pKa = 7.14HH73 pKa = 5.95STKK76 pKa = 10.41KK77 pKa = 10.67GPNGQALMSSTHH89 pKa = 7.21DD90 pKa = 3.65FTLMPSWLKK99 pKa = 10.84NKK101 pKa = 9.77LMSLAGVGLKK111 pKa = 9.85QCFDD115 pKa = 5.1LIDD118 pKa = 4.04SVSMNGISVNSWWNRR133 pKa = 11.84IYY135 pKa = 10.32PVRR138 pKa = 11.84SSTISKK144 pKa = 8.41LTGMSDD150 pKa = 3.45KK151 pKa = 10.8EE152 pKa = 4.46GKK154 pKa = 7.96TSVMGVVDD162 pKa = 3.97YY163 pKa = 10.35WSQTALKK170 pKa = 8.66PLHH173 pKa = 6.41DD174 pKa = 3.71TLMRR178 pKa = 11.84ILSGIGPDD186 pKa = 3.79CTHH189 pKa = 7.09DD190 pKa = 3.44QQSFLTKK197 pKa = 9.89VPSSGVTFYY206 pKa = 11.21SYY208 pKa = 11.81DD209 pKa = 3.41LTNATDD215 pKa = 5.34SMPLWLQGEE224 pKa = 4.61IISRR228 pKa = 11.84MIGKK232 pKa = 9.22DD233 pKa = 3.11RR234 pKa = 11.84AEE236 pKa = 4.01DD237 pKa = 3.29WKK239 pKa = 11.19DD240 pKa = 3.11ILVKK244 pKa = 10.93EE245 pKa = 4.14EE246 pKa = 4.46FSLKK250 pKa = 10.1GHH252 pKa = 5.72PAKK255 pKa = 10.47IKK257 pKa = 10.37FSAGQPMGAYY267 pKa = 10.15SSWPSMALTHH277 pKa = 6.21HH278 pKa = 7.25AIVQLAWISLGNKK291 pKa = 9.66SPTRR295 pKa = 11.84DD296 pKa = 3.54YY297 pKa = 11.85VLLGDD302 pKa = 6.2DD303 pKa = 3.49MVIWNDD309 pKa = 3.38KK310 pKa = 10.56LAMSYY315 pKa = 8.44RR316 pKa = 11.84TLLSSLDD323 pKa = 3.77MPISDD328 pKa = 3.73QKK330 pKa = 8.95THH332 pKa = 6.42ISGSTFEE339 pKa = 4.73FCKK342 pKa = 10.24SWFVNGVEE350 pKa = 4.24VTGFSVPGLWEE361 pKa = 3.99VSSSYY366 pKa = 11.51SKK368 pKa = 10.75LANFLEE374 pKa = 4.55NQEE377 pKa = 4.1SHH379 pKa = 5.15GWKK382 pKa = 10.02PSDD385 pKa = 3.55ASAIPLIMSLYY396 pKa = 9.69NCLGLHH402 pKa = 5.43SQGKK406 pKa = 8.84SVYY409 pKa = 10.1KK410 pKa = 10.51LYY412 pKa = 10.4TVFQTLVKK420 pKa = 9.68TKK422 pKa = 9.52VTGEE426 pKa = 3.99YY427 pKa = 9.57STMAKK432 pKa = 10.65AMTEE436 pKa = 3.82AFRR439 pKa = 11.84WPFYY443 pKa = 8.21EE444 pKa = 3.93TSNEE448 pKa = 3.54IFASILGKK456 pKa = 9.84MKK458 pKa = 10.52EE459 pKa = 4.05EE460 pKa = 3.98QVWKK464 pKa = 10.71DD465 pKa = 3.45MEE467 pKa = 4.41SLQTNVYY474 pKa = 10.02LFHH477 pKa = 8.04DD478 pKa = 4.51EE479 pKa = 4.11FNKK482 pKa = 10.33RR483 pKa = 11.84MSTVNPLWASEE494 pKa = 4.4SYY496 pKa = 8.59KK497 pKa = 9.71TAYY500 pKa = 8.48TEE502 pKa = 3.95RR503 pKa = 11.84VPMLIMAEE511 pKa = 4.13YY512 pKa = 8.96LTMEE516 pKa = 4.58LEE518 pKa = 4.35EE519 pKa = 5.01KK520 pKa = 10.99LMILTGDD527 pKa = 3.66NSSDD531 pKa = 3.45EE532 pKa = 4.12YY533 pKa = 11.42QEE535 pKa = 5.79LIFNEE540 pKa = 4.23SLGSYY545 pKa = 9.84KK546 pKa = 10.4LSKK549 pKa = 10.65HH550 pKa = 5.26FFGLKK555 pKa = 10.35DD556 pKa = 3.41EE557 pKa = 4.83ASSVRR562 pKa = 11.84DD563 pKa = 3.14LSRR566 pKa = 11.84LVKK569 pKa = 10.1PLINKK574 pKa = 9.2VSEE577 pKa = 4.8IINKK581 pKa = 9.58SDD583 pKa = 3.13PTTSVILTTTEE594 pKa = 3.58QMFVKK599 pKa = 9.87DD600 pKa = 3.54TATFGPP606 pKa = 4.18

Molecular weight: 68.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

606

606

606

606.0

68.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.96 ± 0.0

0.825 ± 0.0

4.95 ± 0.0

5.941 ± 0.0

4.455 ± 0.0

5.611 ± 0.0

2.31 ± 0.0

5.446 ± 0.0

6.931 ± 0.0

9.736 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

4.95 ± 0.0

3.63 ± 0.0

4.29 ± 0.0

2.64 ± 0.0

2.31 ± 0.0

12.541 ± 0.0

7.096 ± 0.0

6.106 ± 0.0

2.97 ± 0.0

3.3 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski