Caproiciproducens galactitolivorans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae; Caproiciproducens

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2438 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Z0XZX3|A0A4Z0XZX3_9FIRM HTH-type transcriptional regulator ImmR OS=Caproiciproducens galactitolivorans OX=642589 GN=immR_2 PE=4 SV=1
MM1 pKa = 7.64IATLDD6 pKa = 3.36RR7 pKa = 11.84SGCISCGLCPEE18 pKa = 4.65TCPEE22 pKa = 4.13VFRR25 pKa = 11.84MGDD28 pKa = 3.35DD29 pKa = 3.43GVAEE33 pKa = 4.16VWNEE37 pKa = 3.83NVPPEE42 pKa = 4.72AEE44 pKa = 4.27DD45 pKa = 3.87KK46 pKa = 11.01AIQAQEE52 pKa = 4.17GCPVSVITVEE62 pKa = 3.87

Molecular weight: 6.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Z0XWD6|A0A4Z0XWD6_9FIRM Pyridoxamine 5'-phosphate oxidase OS=Caproiciproducens galactitolivorans OX=642589 GN=CAGA_22600 PE=4 SV=1
MM1 pKa = 7.25QKK3 pKa = 8.8TRR5 pKa = 11.84LPRR8 pKa = 11.84IKK10 pKa = 10.37GISAMFLEE18 pKa = 5.2IASLDD23 pKa = 3.33NRR25 pKa = 11.84RR26 pKa = 11.84PFEE29 pKa = 4.16LKK31 pKa = 10.53YY32 pKa = 10.73VINVYY37 pKa = 8.28RR38 pKa = 11.84TKK40 pKa = 10.81NVEE43 pKa = 4.04TVALYY48 pKa = 9.98EE49 pKa = 3.83NRR51 pKa = 11.84LRR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 11.84LHH57 pKa = 6.25NDD59 pKa = 2.4

Molecular weight: 7.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2438

0

2438

752679

29

2600

308.7

34.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.343 ± 0.055

1.594 ± 0.023

5.384 ± 0.042

6.549 ± 0.052

4.129 ± 0.037

7.209 ± 0.042

1.691 ± 0.023

7.187 ± 0.051

6.683 ± 0.042

9.127 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.832 ± 0.023

4.448 ± 0.034

3.775 ± 0.032

3.321 ± 0.029

4.651 ± 0.049

6.243 ± 0.04

5.487 ± 0.048

6.959 ± 0.042

0.807 ± 0.016

3.583 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski