Amino acid dipepetide frequency for Caballeronia telluris

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	17.063AlaAla: 17.063 ± 0.14	1.341AlaCys: 1.341 ± 0.027	6.662AlaAsp: 6.662 ± 0.062	6.098AlaGlu: 6.098 ± 0.063	4.507AlaPhe: 4.507 ± 0.054	10.15AlaGly: 10.15 ± 0.08	2.837AlaHis: 2.837 ± 0.038	5.975AlaIle: 5.975 ± 0.059	4.21AlaLys: 4.21 ± 0.053	14.397AlaLeu: 14.397 ± 0.11	3.337AlaMet: 3.337 ± 0.04	3.391AlaAsn: 3.391 ± 0.048	5.954AlaPro: 5.954 ± 0.076	4.989AlaGln: 4.989 ± 0.056	9.367AlaArg: 9.367 ± 0.089	7.89AlaSer: 7.89 ± 0.073	6.435AlaThr: 6.435 ± 0.061	8.685AlaVal: 8.685 ± 0.076	1.642AlaTrp: 1.642 ± 0.031	2.704AlaTyr: 2.704 ± 0.037	0.0AlaXaa: 0.0 ± 0.0
Cys	1.253CysAla: 1.253 ± 0.026	0.136CysCys: 0.136 ± 0.008	0.574CysAsp: 0.574 ± 0.02	0.511CysGlu: 0.511 ± 0.016	0.343CysPhe: 0.343 ± 0.014	1.005CysGly: 1.005 ± 0.026	0.254CysHis: 0.254 ± 0.014	0.429CysIle: 0.429 ± 0.017	0.224CysLys: 0.224 ± 0.011	0.765CysLeu: 0.765 ± 0.017	0.206CysMet: 0.206 ± 0.009	0.245CysAsn: 0.245 ± 0.012	0.443CysPro: 0.443 ± 0.016	0.214CysGln: 0.214 ± 0.011	0.632CysArg: 0.632 ± 0.017	0.499CysSer: 0.499 ± 0.016	0.467CysThr: 0.467 ± 0.015	0.793CysVal: 0.793 ± 0.018	0.122CysTrp: 0.122 ± 0.008	0.222CysTyr: 0.222 ± 0.012	0.0CysXaa: 0.0 ± 0.0
Asp	8.156AspAla: 8.156 ± 0.094	0.453AspCys: 0.453 ± 0.016	3.44AspAsp: 3.44 ± 0.046	3.634AspGlu: 3.634 ± 0.045	2.083AspPhe: 2.083 ± 0.03	4.56AspGly: 4.56 ± 0.056	1.168AspHis: 1.168 ± 0.025	2.613AspIle: 2.613 ± 0.044	1.643AspLys: 1.643 ± 0.029	5.215AspLeu: 5.215 ± 0.062	1.187AspMet: 1.187 ± 0.023	1.263AspAsn: 1.263 ± 0.026	3.025AspPro: 3.025 ± 0.044	1.505AspGln: 1.505 ± 0.029	3.487AspArg: 3.487 ± 0.045	2.589AspSer: 2.589 ± 0.04	2.822AspThr: 2.822 ± 0.039	4.446AspVal: 4.446 ± 0.048	0.932AspTrp: 0.932 ± 0.024	1.511AspTyr: 1.511 ± 0.025	0.0AspXaa: 0.0 ± 0.0
Glu	6.773GluAla: 6.773 ± 0.075	0.403GluCys: 0.403 ± 0.014	2.14GluAsp: 2.14 ± 0.031	2.543GluGlu: 2.543 ± 0.046	1.831GluPhe: 1.831 ± 0.028	3.578GluGly: 3.578 ± 0.047	1.437GluHis: 1.437 ± 0.029	2.756GluIle: 2.756 ± 0.041	1.955GluLys: 1.955 ± 0.041	5.376GluLeu: 5.376 ± 0.056	1.218GluMet: 1.218 ± 0.029	1.425GluAsn: 1.425 ± 0.028	2.588GluPro: 2.588 ± 0.037	2.229GluGln: 2.229 ± 0.038	5.2GluArg: 5.2 ± 0.057	2.77GluSer: 2.77 ± 0.043	3.01GluThr: 3.01 ± 0.039	3.413GluVal: 3.413 ± 0.052	0.744GluTrp: 0.744 ± 0.019	1.13GluTyr: 1.13 ± 0.026	0.0GluXaa: 0.0 ± 0.0
Phe	4.86PheAla: 4.86 ± 0.056	0.444PheCys: 0.444 ± 0.016	2.819PheAsp: 2.819 ± 0.038	2.169PheGlu: 2.169 ± 0.034	1.546PhePhe: 1.546 ± 0.034	3.739PheGly: 3.739 ± 0.052	0.743PheHis: 0.743 ± 0.021	1.667PheIle: 1.667 ± 0.03	1.058PheLys: 1.058 ± 0.024	3.057PheLeu: 3.057 ± 0.042	0.785PheMet: 0.785 ± 0.017	1.145PheAsn: 1.145 ± 0.025	1.612PhePro: 1.612 ± 0.03	0.976PheGln: 0.976 ± 0.025	2.008PheArg: 2.008 ± 0.034	2.278PheSer: 2.278 ± 0.031	1.973PheThr: 1.973 ± 0.031	3.208PheVal: 3.208 ± 0.049	0.519PheTrp: 0.519 ± 0.019	0.971PheTyr: 0.971 ± 0.026	0.0PheXaa: 0.0 ± 0.0
Gly	9.522GlyAla: 9.522 ± 0.083	0.845GlyCys: 0.845 ± 0.02	4.009GlyAsp: 4.009 ± 0.048	4.345GlyGlu: 4.345 ± 0.044	3.443GlyPhe: 3.443 ± 0.047	6.699GlyGly: 6.699 ± 0.075	1.884GlyHis: 1.884 ± 0.03	4.354GlyIle: 4.354 ± 0.058	3.171GlyLys: 3.171 ± 0.045	7.736GlyLeu: 7.736 ± 0.065	2.22GlyMet: 2.22 ± 0.034	2.276GlyAsn: 2.276 ± 0.05	2.877GlyPro: 2.877 ± 0.039	2.542GlyGln: 2.542 ± 0.043	5.38GlyArg: 5.38 ± 0.059	4.49GlySer: 4.49 ± 0.054	4.538GlyThr: 4.538 ± 0.062	6.739GlyVal: 6.739 ± 0.063	1.33GlyTrp: 1.33 ± 0.029	2.334GlyTyr: 2.334 ± 0.038	0.0GlyXaa: 0.0 ± 0.0
His	3.052HisAla: 3.052 ± 0.044	0.26HisCys: 0.26 ± 0.011	1.39HisAsp: 1.39 ± 0.025	1.268HisGlu: 1.268 ± 0.029	0.914HisPhe: 0.914 ± 0.023	2.131HisGly: 2.131 ± 0.035	0.652HisHis: 0.652 ± 0.019	0.923HisIle: 0.923 ± 0.022	0.571HisLys: 0.571 ± 0.018	2.127HisLeu: 2.127 ± 0.036	0.502HisMet: 0.502 ± 0.016	0.508HisAsn: 0.508 ± 0.015	1.421HisPro: 1.421 ± 0.027	0.621HisGln: 0.621 ± 0.017	1.557HisArg: 1.557 ± 0.035	1.084HisSer: 1.084 ± 0.021	1.052HisThr: 1.052 ± 0.023	1.714HisVal: 1.714 ± 0.032	0.405HisTrp: 0.405 ± 0.013	0.671HisTyr: 0.671 ± 0.018	0.0HisXaa: 0.0 ± 0.0
Ile	7.286IleAla: 7.286 ± 0.067	0.44IleCys: 0.44 ± 0.015	3.781IleAsp: 3.781 ± 0.05	3.379IleGlu: 3.379 ± 0.048	1.493IlePhe: 1.493 ± 0.031	4.916IleGly: 4.916 ± 0.056	0.922IleHis: 0.922 ± 0.023	1.604IleIle: 1.604 ± 0.031	1.37IleLys: 1.37 ± 0.031	3.417IleLeu: 3.417 ± 0.045	0.757IleMet: 0.757 ± 0.021	1.36IleAsn: 1.36 ± 0.027	2.057IlePro: 2.057 ± 0.04	1.192IleGln: 1.192 ± 0.024	2.797IleArg: 2.797 ± 0.044	2.434IleSer: 2.434 ± 0.035	2.279IleThr: 2.279 ± 0.039	4.604IleVal: 4.604 ± 0.054	0.516IleTrp: 0.516 ± 0.015	1.039IleTyr: 1.039 ± 0.023	0.0IleXaa: 0.0 ± 0.0
Lys	3.683LysAla: 3.683 ± 0.052	0.188LysCys: 0.188 ± 0.01	1.55LysAsp: 1.55 ± 0.032	1.585LysGlu: 1.585 ± 0.033	0.952LysPhe: 0.952 ± 0.026	2.31LysGly: 2.31 ± 0.044	0.791LysHis: 0.791 ± 0.023	1.658LysIle: 1.658 ± 0.032	1.469LysLys: 1.469 ± 0.04	3.494LysLeu: 3.494 ± 0.055	0.861LysMet: 0.861 ± 0.023	0.945LysAsn: 0.945 ± 0.02	2.098LysPro: 2.098 ± 0.033	1.292LysGln: 1.292 ± 0.026	2.593LysArg: 2.593 ± 0.041	2.002LysSer: 2.002 ± 0.033	2.064LysThr: 2.064 ± 0.031	2.37LysVal: 2.37 ± 0.041	0.403LysTrp: 0.403 ± 0.014	0.737LysTyr: 0.737 ± 0.02	0.0LysXaa: 0.0 ± 0.0
Leu	14.013LeuAla: 14.013 ± 0.112	1.024LeuCys: 1.024 ± 0.024	6.154LeuAsp: 6.154 ± 0.057	4.762LeuGlu: 4.762 ± 0.059	3.672LeuPhe: 3.672 ± 0.047	7.925LeuGly: 7.925 ± 0.074	2.202LeuHis: 2.202 ± 0.038	4.727LeuIle: 4.727 ± 0.058	3.538LeuLys: 3.538 ± 0.041	9.687LeuLeu: 9.687 ± 0.093	2.253LeuMet: 2.253 ± 0.038	2.748LeuAsn: 2.748 ± 0.036	5.507LeuPro: 5.507 ± 0.054	3.149LeuGln: 3.149 ± 0.038	6.886LeuArg: 6.886 ± 0.068	6.081LeuSer: 6.081 ± 0.057	5.526LeuThr: 5.526 ± 0.057	7.525LeuVal: 7.525 ± 0.064	1.128LeuTrp: 1.128 ± 0.025	2.143LeuTyr: 2.143 ± 0.034	0.0LeuXaa: 0.0 ± 0.0
Met	2.473MetAla: 2.473 ± 0.039	0.186MetCys: 0.186 ± 0.009	0.924MetAsp: 0.924 ± 0.023	0.955MetGlu: 0.955 ± 0.021	0.782MetPhe: 0.782 ± 0.022	1.52MetGly: 1.52 ± 0.027	0.554MetHis: 0.554 ± 0.014	1.196MetIle: 1.196 ± 0.025	1.116MetLys: 1.116 ± 0.024	2.737MetLeu: 2.737 ± 0.041	0.604MetMet: 0.604 ± 0.019	0.99MetAsn: 0.99 ± 0.021	1.509MetPro: 1.509 ± 0.029	1.021MetGln: 1.021 ± 0.024	1.85MetArg: 1.85 ± 0.03	1.817MetSer: 1.817 ± 0.027	1.692MetThr: 1.692 ± 0.027	1.409MetVal: 1.409 ± 0.03	0.223MetTrp: 0.223 ± 0.01	0.399MetTyr: 0.399 ± 0.013	0.0MetXaa: 0.0 ± 0.0
Asn	3.701AsnAla: 3.701 ± 0.052	0.251AsnCys: 0.251 ± 0.012	1.506AsnAsp: 1.506 ± 0.025	1.397AsnGlu: 1.397 ± 0.028	1.002AsnPhe: 1.002 ± 0.027	2.57AsnGly: 2.57 ± 0.04	0.548AsnHis: 0.548 ± 0.016	1.229AsnIle: 1.229 ± 0.028	0.762AsnLys: 0.762 ± 0.02	2.666AsnLeu: 2.666 ± 0.036	0.549AsnMet: 0.549 ± 0.02	0.815AsnAsn: 0.815 ± 0.021	1.83AsnPro: 1.83 ± 0.035	0.905AsnGln: 0.905 ± 0.023	1.868AsnArg: 1.868 ± 0.035	1.352AsnSer: 1.352 ± 0.027	1.447AsnThr: 1.447 ± 0.037	2.344AsnVal: 2.344 ± 0.04	0.427AsnTrp: 0.427 ± 0.015	0.695AsnTyr: 0.695 ± 0.018	0.0AsnXaa: 0.0 ± 0.0
Pro	6.523ProAla: 6.523 ± 0.078	0.374ProCys: 0.374 ± 0.013	3.263ProAsp: 3.263 ± 0.042	2.962ProGlu: 2.962 ± 0.037	1.98ProPhe: 1.98 ± 0.035	4.097ProGly: 4.097 ± 0.048	1.216ProHis: 1.216 ± 0.027	1.988ProIle: 1.988 ± 0.031	1.618ProLys: 1.618 ± 0.029	5.028ProLeu: 5.028 ± 0.054	1.155ProMet: 1.155 ± 0.026	1.489ProAsn: 1.489 ± 0.029	2.492ProPro: 2.492 ± 0.04	1.792ProGln: 1.792 ± 0.034	2.922ProArg: 2.922 ± 0.04	2.979ProSer: 2.979 ± 0.043	2.484ProThr: 2.484 ± 0.037	4.214ProVal: 4.214 ± 0.046	0.665ProTrp: 0.665 ± 0.017	1.171ProTyr: 1.171 ± 0.024	0.0ProXaa: 0.0 ± 0.0
Gln	4.16GlnAla: 4.16 ± 0.051	0.28GlnCys: 0.28 ± 0.011	1.322GlnAsp: 1.322 ± 0.025	1.362GlnGlu: 1.362 ± 0.027	1.263GlnPhe: 1.263 ± 0.027	2.3GlnGly: 2.3 ± 0.041	0.873GlnHis: 0.873 ± 0.023	1.872GlnIle: 1.872 ± 0.033	1.218GlnLys: 1.218 ± 0.03	3.499GlnLeu: 3.499 ± 0.055	0.992GlnMet: 0.992 ± 0.024	0.913GlnAsn: 0.913 ± 0.023	1.864GlnPro: 1.864 ± 0.035	1.68GlnGln: 1.68 ± 0.04	2.721GlnArg: 2.721 ± 0.038	2.041GlnSer: 2.041 ± 0.036	1.997GlnThr: 1.997 ± 0.035	2.409GlnVal: 2.409 ± 0.034	0.546GlnTrp: 0.546 ± 0.017	0.871GlnTyr: 0.871 ± 0.02	0.0GlnXaa: 0.0 ± 0.0
Arg	8.653ArgAla: 8.653 ± 0.085	0.605ArgCys: 0.605 ± 0.019	4.073ArgAsp: 4.073 ± 0.054	4.453ArgGlu: 4.453 ± 0.055	3.025ArgPhe: 3.025 ± 0.042	4.713ArgGly: 4.713 ± 0.051	1.822ArgHis: 1.822 ± 0.032	3.619ArgIle: 3.619 ± 0.051	2.147ArgLys: 2.147 ± 0.037	7.232ArgLeu: 7.232 ± 0.077	1.876ArgMet: 1.876 ± 0.034	1.907ArgAsn: 1.907 ± 0.03	3.115ArgPro: 3.115 ± 0.042	2.385ArgGln: 2.385 ± 0.03	5.507ArgArg: 5.507 ± 0.066	3.506ArgSer: 3.506 ± 0.047	3.441ArgThr: 3.441 ± 0.05	5.436ArgVal: 5.436 ± 0.053	1.056ArgTrp: 1.056 ± 0.025	1.948ArgTyr: 1.948 ± 0.036	0.0ArgXaa: 0.0 ± 0.0
Ser	7.045SerAla: 7.045 ± 0.07	0.46SerCys: 0.46 ± 0.017	2.934SerAsp: 2.934 ± 0.046	2.671SerGlu: 2.671 ± 0.041	2.225SerPhe: 2.225 ± 0.033	5.312SerGly: 5.312 ± 0.059	1.226SerHis: 1.226 ± 0.024	2.871SerIle: 2.871 ± 0.039	1.821SerLys: 1.821 ± 0.034	5.732SerLeu: 5.732 ± 0.061	1.498SerMet: 1.498 ± 0.023	1.665SerAsn: 1.665 ± 0.029	2.853SerPro: 2.853 ± 0.042	1.852SerGln: 1.852 ± 0.033	3.753SerArg: 3.753 ± 0.044	3.387SerSer: 3.387 ± 0.055	3.24SerThr: 3.24 ± 0.051	4.475SerVal: 4.475 ± 0.047	0.706SerTrp: 0.706 ± 0.017	1.295SerTyr: 1.295 ± 0.029	0.0SerXaa: 0.0 ± 0.0
Thr	5.96ThrAla: 5.96 ± 0.068	0.418ThrCys: 0.418 ± 0.016	2.793ThrAsp: 2.793 ± 0.048	2.331ThrGlu: 2.331 ± 0.034	1.975ThrPhe: 1.975 ± 0.029	4.719ThrGly: 4.719 ± 0.06	1.25ThrHis: 1.25 ± 0.03	2.669ThrIle: 2.669 ± 0.038	1.462ThrLys: 1.462 ± 0.027	6.442ThrLeu: 6.442 ± 0.057	1.255ThrMet: 1.255 ± 0.026	1.424ThrAsn: 1.424 ± 0.031	3.453ThrPro: 3.453 ± 0.046	1.937ThrGln: 1.937 ± 0.039	3.651ThrArg: 3.651 ± 0.045	3.016ThrSer: 3.016 ± 0.052	2.935ThrThr: 2.935 ± 0.05	4.306ThrVal: 4.306 ± 0.05	0.648ThrTrp: 0.648 ± 0.019	1.22ThrTyr: 1.22 ± 0.032	0.0ThrXaa: 0.0 ± 0.0
Val	9.581ValAla: 9.581 ± 0.077	0.834ValCys: 0.834 ± 0.023	4.35ValAsp: 4.35 ± 0.053	4.376ValGlu: 4.376 ± 0.064	2.915ValPhe: 2.915 ± 0.04	5.5ValGly: 5.5 ± 0.069	1.551ValHis: 1.551 ± 0.03	3.882ValIle: 3.882 ± 0.049	2.598ValLys: 2.598 ± 0.038	7.715ValLeu: 7.715 ± 0.073	1.874ValMet: 1.874 ± 0.035	2.26ValAsn: 2.26 ± 0.035	3.883ValPro: 3.883 ± 0.043	2.437ValGln: 2.437 ± 0.033	5.159ValArg: 5.159 ± 0.049	4.707ValSer: 4.707 ± 0.049	4.496ValThr: 4.496 ± 0.056	6.365ValVal: 6.365 ± 0.07	0.965ValTrp: 0.965 ± 0.025	1.724ValTyr: 1.724 ± 0.033	0.0ValXaa: 0.0 ± 0.0
Trp	1.145TrpAla: 1.145 ± 0.028	0.132TrpCys: 0.132 ± 0.008	0.638TrpAsp: 0.638 ± 0.02	0.507TrpGlu: 0.507 ± 0.016	0.582TrpPhe: 0.582 ± 0.017	0.843TrpGly: 0.843 ± 0.022	0.411TrpHis: 0.411 ± 0.017	0.725TrpIle: 0.725 ± 0.02	0.436TrpLys: 0.436 ± 0.015	1.878TrpLeu: 1.878 ± 0.037	0.371TrpMet: 0.371 ± 0.014	0.472TrpAsn: 0.472 ± 0.016	0.643TrpPro: 0.643 ± 0.02	0.635TrpGln: 0.635 ± 0.02	1.22TrpArg: 1.22 ± 0.028	0.794TrpSer: 0.794 ± 0.02	0.748TrpThr: 0.748 ± 0.019	0.883TrpVal: 0.883 ± 0.02	0.221TrpTrp: 0.221 ± 0.012	0.307TrpTyr: 0.307 ± 0.011	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.729TyrAla: 2.729 ± 0.031	0.266TyrCys: 0.266 ± 0.012	1.409TyrAsp: 1.409 ± 0.051	1.209TyrGlu: 1.209 ± 0.025	1.043TyrPhe: 1.043 ± 0.023	2.144TyrGly: 2.144 ± 0.039	0.481TyrHis: 0.481 ± 0.015	0.889TyrIle: 0.889 ± 0.023	0.657TyrLys: 0.657 ± 0.02	2.449TyrLeu: 2.449 ± 0.041	0.456TyrMet: 0.456 ± 0.018	0.623TyrAsn: 0.623 ± 0.018	1.189TyrPro: 1.189 ± 0.024	0.832TyrGln: 0.832 ± 0.022	1.963TyrArg: 1.963 ± 0.033	1.304TyrSer: 1.304 ± 0.026	1.221TyrThr: 1.221 ± 0.029	1.836TyrVal: 1.836 ± 0.032	0.394TyrTrp: 0.394 ± 0.013	0.63TyrTyr: 0.63 ± 0.02	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 6225 proteins (1965106 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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