Panax ginseng flexivirus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; unclassified Betaflexiviridae

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346G7K3|A0A346G7K3_9VIRU Coat protein OS=Panax ginseng flexivirus 1 OX=2303411 PE=4 SV=1
MM1 pKa = 7.1LQKK4 pKa = 10.84DD5 pKa = 4.33LLLGLLGAALVYY17 pKa = 10.34LALVLVDD24 pKa = 3.75NFKK27 pKa = 11.19EE28 pKa = 4.38SGCSIRR34 pKa = 11.84LTGEE38 pKa = 3.8SVSVINCQDD47 pKa = 3.38LEE49 pKa = 4.29AVAKK53 pKa = 10.13LIRR56 pKa = 11.84NSKK59 pKa = 9.35PLWLSLGGRR68 pKa = 11.84GDD70 pKa = 3.59FEE72 pKa = 5.84IIEE75 pKa = 4.27EE76 pKa = 4.34RR77 pKa = 11.84CC78 pKa = 3.2

Molecular weight: 8.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346G7K2|A0A346G7K2_9VIRU Movement protein TGBp3 OS=Panax ginseng flexivirus 1 OX=2303411 PE=3 SV=1
MM1 pKa = 7.71SFQQPADD8 pKa = 2.97WSKK11 pKa = 11.19NLRR14 pKa = 11.84PLLIGGGVALILFFFRR30 pKa = 11.84QNNLPHH36 pKa = 6.57TGDD39 pKa = 4.38NIHH42 pKa = 6.49SLPHH46 pKa = 5.99GGQYY50 pKa = 10.37QDD52 pKa = 2.8GTKK55 pKa = 10.16RR56 pKa = 11.84INYY59 pKa = 7.75CGPKK63 pKa = 10.08KK64 pKa = 10.36NFPGPGILSIGSSSTAFVILIVLVALIYY92 pKa = 10.53ASEE95 pKa = 4.37RR96 pKa = 11.84FTARR100 pKa = 11.84IVRR103 pKa = 11.84RR104 pKa = 11.84CPCVPGTCASRR115 pKa = 3.42

Molecular weight: 12.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2845

78

2139

569.0

64.58

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.975 ± 0.993

2.917 ± 0.465

5.8 ± 0.637

6.784 ± 0.894

6.432 ± 0.697

6.081 ± 0.669

2.601 ± 0.368

5.518 ± 0.564

6.995 ± 0.396

10.369 ± 0.791

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.25 ± 0.536

4.851 ± 0.25

3.409 ± 0.525

2.46 ± 0.309

5.835 ± 0.347

8.647 ± 0.35

3.339 ± 0.294

5.905 ± 0.688

1.09 ± 0.209

2.742 ± 0.523
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski