Le Dantec virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Ledantevirus; Le Dantec ledantevirus

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R1W0|A0A0D3R1W0_9RHAB Phosphoprotein OS=Le Dantec virus OX=318848 PE=4 SV=1
MM1 pKa = 7.48LSSRR5 pKa = 11.84DD6 pKa = 3.4RR7 pKa = 11.84VKK9 pKa = 11.03AIASKK14 pKa = 11.0EE15 pKa = 3.92FFNDD19 pKa = 2.63IDD21 pKa = 3.78GKK23 pKa = 9.94QFEE26 pKa = 4.33EE27 pKa = 4.23DD28 pKa = 3.16QGEE31 pKa = 4.3EE32 pKa = 4.12EE33 pKa = 4.69HH34 pKa = 6.77VSPVPEE40 pKa = 4.48IDD42 pKa = 4.18SDD44 pKa = 4.05FKK46 pKa = 11.21KK47 pKa = 10.96LKK49 pKa = 10.62GSLDD53 pKa = 3.63DD54 pKa = 4.29KK55 pKa = 11.32EE56 pKa = 4.4EE57 pKa = 4.15EE58 pKa = 4.2EE59 pKa = 4.94GFDD62 pKa = 4.14DD63 pKa = 3.47VTEE66 pKa = 4.27IVDD69 pKa = 3.91EE70 pKa = 4.58NGSDD74 pKa = 3.65SDD76 pKa = 4.01SAGDD80 pKa = 3.57INLMISNSEE89 pKa = 3.95NSGDD93 pKa = 4.16DD94 pKa = 3.94DD95 pKa = 4.36NPAALVGRR103 pKa = 11.84HH104 pKa = 5.56EE105 pKa = 4.74YY106 pKa = 10.44IEE108 pKa = 4.3TDD110 pKa = 3.36LKK112 pKa = 11.2HH113 pKa = 6.25FALSDD118 pKa = 3.55EE119 pKa = 4.93LEE121 pKa = 4.29SHH123 pKa = 7.07LSSQEE128 pKa = 3.43EE129 pKa = 4.14IAAHH133 pKa = 5.93EE134 pKa = 4.54SGHH137 pKa = 6.26RR138 pKa = 11.84NSSLNISLPKK148 pKa = 10.37LVLDD152 pKa = 4.9EE153 pKa = 5.38IKK155 pKa = 10.52DD156 pKa = 3.7QKK158 pKa = 11.17EE159 pKa = 3.66LDD161 pKa = 3.97EE162 pKa = 4.49TCMGLLHH169 pKa = 7.1AFAAHH174 pKa = 6.93LGWSVVPMYY183 pKa = 10.84SQVSEE188 pKa = 4.11EE189 pKa = 3.82KK190 pKa = 10.87LIINVKK196 pKa = 6.97QVKK199 pKa = 9.67RR200 pKa = 11.84SKK202 pKa = 9.6QHH204 pKa = 5.28MSISSTDD211 pKa = 2.81MDD213 pKa = 3.68QPVVEE218 pKa = 4.89NLAKK222 pKa = 10.34VNRR225 pKa = 11.84GRR227 pKa = 11.84SSEE230 pKa = 4.03RR231 pKa = 11.84FEE233 pKa = 5.41GKK235 pKa = 9.97DD236 pKa = 3.02KK237 pKa = 11.27EE238 pKa = 4.28RR239 pKa = 11.84FKK241 pKa = 11.48EE242 pKa = 4.51FVEE245 pKa = 4.52KK246 pKa = 10.28MSSGQIRR253 pKa = 11.84FIKK256 pKa = 9.97KK257 pKa = 9.27KK258 pKa = 9.74KK259 pKa = 10.09NGFISLTLATPGVTMEE275 pKa = 4.63LVKK278 pKa = 10.58QALDD282 pKa = 3.32QCVLEE287 pKa = 4.76KK288 pKa = 11.03DD289 pKa = 4.15VIDD292 pKa = 4.19MILRR296 pKa = 11.84EE297 pKa = 4.62SNMLTLVKK305 pKa = 9.13TLCIYY310 pKa = 10.01PP311 pKa = 3.83

Molecular weight: 35.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1R3|A0A0D3R1R3_9RHAB GDP polyribonucleotidyltransferase OS=Le Dantec virus OX=318848 PE=4 SV=1
MM1 pKa = 7.56FSRR4 pKa = 11.84FKK6 pKa = 10.93KK7 pKa = 10.53SLSKK11 pKa = 10.55KK12 pKa = 10.16GKK14 pKa = 9.89NDD16 pKa = 3.9DD17 pKa = 3.65NQLLYY22 pKa = 10.77DD23 pKa = 4.34PPAYY27 pKa = 10.52DD28 pKa = 3.7SDD30 pKa = 5.48DD31 pKa = 3.52FFAPIKK37 pKa = 10.37PSAPDD42 pKa = 3.62LEE44 pKa = 6.12LEE46 pKa = 4.41DD47 pKa = 4.31FRR49 pKa = 11.84KK50 pKa = 8.53EE51 pKa = 4.18TLHH54 pKa = 7.74VEE56 pKa = 3.78AEE58 pKa = 4.56LIIKK62 pKa = 6.98THH64 pKa = 6.22AGIKK68 pKa = 9.23TMEE71 pKa = 4.43EE72 pKa = 3.76LLKK75 pKa = 10.7ILGIWIDD82 pKa = 3.54QCSGPIRR89 pKa = 11.84QRR91 pKa = 11.84HH92 pKa = 5.43LDD94 pKa = 3.33LWVYY98 pKa = 10.84LCLGLHH104 pKa = 5.5VRR106 pKa = 11.84RR107 pKa = 11.84DD108 pKa = 3.82VGIKK112 pKa = 9.91SYY114 pKa = 11.01NVYY117 pKa = 10.16RR118 pKa = 11.84AALDD122 pKa = 3.47SSVVFLHH129 pKa = 7.06APKK132 pKa = 9.16TQGKK136 pKa = 8.16FQFVPCHH143 pKa = 5.4QFFTQKK149 pKa = 10.91YY150 pKa = 8.04KK151 pKa = 11.27GKK153 pKa = 10.22DD154 pKa = 3.11CDD156 pKa = 3.69VDD158 pKa = 4.32FTCKK162 pKa = 10.19FKK164 pKa = 9.64EE165 pKa = 4.51TKK167 pKa = 9.15RR168 pKa = 11.84TGIPAHH174 pKa = 6.28TIYY177 pKa = 11.1NQVLKK182 pKa = 10.96SGFPPPKK189 pKa = 9.17PIEE192 pKa = 4.05VFAGYY197 pKa = 10.61DD198 pKa = 3.26VTVSVNKK205 pKa = 10.49NGEE208 pKa = 3.98HH209 pKa = 6.86EE210 pKa = 4.33IAASATT216 pKa = 3.55

Molecular weight: 24.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3714

64

2126

619.0

70.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.985 ± 0.778

1.939 ± 0.301

6.327 ± 0.41

6.651 ± 0.739

4.793 ± 0.358

6.193 ± 0.352

2.881 ± 0.286

6.893 ± 0.825

7.27 ± 0.432

9.828 ± 0.663

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.746 ± 0.196

4.604 ± 0.367

4.308 ± 0.258

2.8 ± 0.196

5.197 ± 0.413

7.997 ± 0.367

5.089 ± 0.413

5.52 ± 0.688

1.642 ± 0.217

3.339 ± 0.321
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski