Phytophthora parasitica P1569

Taxonomy: cellular organisms; Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26477 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V9F7K1|V9F7K1_PHYPR Uncharacterized protein OS=Phytophthora parasitica P1569 OX=1317065 GN=F443_08917 PE=4 SV=1
MM1 pKa = 7.07QVFGVTALVFLALQGSVQAVQNAITCTTTADD32 pKa = 4.08CAWGEE37 pKa = 4.35TCVAGDD43 pKa = 4.38ADD45 pKa = 4.21TSVQACVAPTVCGGSSMGNCPSDD68 pKa = 3.53DD69 pKa = 3.83TGKK72 pKa = 10.26LACLWRR78 pKa = 11.84PFNDD82 pKa = 3.49CSEE85 pKa = 4.19GCAILNGNKK94 pKa = 10.11GIYY97 pKa = 9.36KK98 pKa = 9.7CVSITRR104 pKa = 11.84CDD106 pKa = 3.2AYY108 pKa = 11.34YY109 pKa = 10.86GGSKK113 pKa = 10.56CSDD116 pKa = 3.33GCSVNGVRR124 pKa = 11.84CNGQGSCNMMSSNADD139 pKa = 3.18GTPVFGCTCNNGYY152 pKa = 10.29SGEE155 pKa = 4.16KK156 pKa = 10.27CEE158 pKa = 4.58NAPGLTNTSSTDD170 pKa = 3.15TDD172 pKa = 4.45DD173 pKa = 5.33EE174 pKa = 5.0DD175 pKa = 4.87SFWGALDD182 pKa = 4.37GGSDD186 pKa = 4.78DD187 pKa = 5.26DD188 pKa = 4.56ASKK191 pKa = 11.23NGSDD195 pKa = 5.13DD196 pKa = 4.78ANADD200 pKa = 3.74DD201 pKa = 5.94SGTSDD206 pKa = 5.21DD207 pKa = 4.56KK208 pKa = 11.59STDD211 pKa = 3.3ASDD214 pKa = 5.54DD215 pKa = 3.73SATDD219 pKa = 3.38EE220 pKa = 4.69SSTDD224 pKa = 3.33TSDD227 pKa = 5.54DD228 pKa = 3.51SSTDD232 pKa = 3.34ADD234 pKa = 3.91QSTTDD239 pKa = 4.91ASDD242 pKa = 3.3EE243 pKa = 4.63SNADD247 pKa = 3.72DD248 pKa = 4.71NAEE251 pKa = 4.43DD252 pKa = 4.61DD253 pKa = 4.38SASSSSSASSSGEE266 pKa = 3.78LANSEE271 pKa = 4.76SVSSTSRR278 pKa = 11.84SGIRR282 pKa = 11.84PGVLILVLVMTAFFLVGTVLLVAYY306 pKa = 9.47SRR308 pKa = 11.84RR309 pKa = 11.84RR310 pKa = 11.84KK311 pKa = 7.81QQEE314 pKa = 3.7EE315 pKa = 4.23EE316 pKa = 4.47EE317 pKa = 4.48YY318 pKa = 11.43ANALASTQGVGAVGARR334 pKa = 11.84DD335 pKa = 3.4LAAGHH340 pKa = 6.21TGRR343 pKa = 11.84TPRR346 pKa = 11.84SNIARR351 pKa = 11.84MM352 pKa = 3.51

Molecular weight: 35.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V9FPT3|V9FPT3_PHYPR Uncharacterized protein (Fragment) OS=Phytophthora parasitica P1569 OX=1317065 GN=F443_04150 PE=4 SV=1
MM1 pKa = 7.22SRR3 pKa = 11.84SPGRR7 pKa = 11.84SRR9 pKa = 11.84HH10 pKa = 5.3GSGAAPVLARR20 pKa = 11.84SRR22 pKa = 11.84RR23 pKa = 11.84KK24 pKa = 10.31LGTAHH29 pKa = 7.34AMLAHH34 pKa = 6.89AKK36 pKa = 8.69TRR38 pKa = 3.52

Molecular weight: 4.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22968

3509

26477

10979262

30

11994

414.7

46.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.605 ± 0.015

1.655 ± 0.007

5.669 ± 0.012

6.675 ± 0.018

3.749 ± 0.01

5.864 ± 0.017

2.34 ± 0.007

4.264 ± 0.01

5.21 ± 0.017

9.4 ± 0.02

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.458 ± 0.007

3.671 ± 0.009

4.671 ± 0.012

4.261 ± 0.012

6.324 ± 0.018

8.368 ± 0.019

6.007 ± 0.014

7.001 ± 0.012

1.207 ± 0.005

2.599 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski