Daedalea quercina L-15889

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Polyporales; Fomitopsidaceae; Daedalea; Daedalea quercina

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12170 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A165LHK6|A0A165LHK6_9APHY Glutathione transferase OS=Daedalea quercina L-15889 OX=1314783 GN=DAEQUDRAFT_732662 PE=3 SV=1
MM1 pKa = 6.94NTFFGLLIASLCGLTNALYY20 pKa = 9.97IPVRR24 pKa = 11.84VNHH27 pKa = 6.94DD28 pKa = 3.44AQASSSGTGVHH39 pKa = 6.02NPAIRR44 pKa = 11.84LVGSFRR50 pKa = 11.84QQSDD54 pKa = 3.3DD55 pKa = 3.76ANNGSVVNFQDD66 pKa = 3.15TVYY69 pKa = 9.36ATNMTIGGQDD79 pKa = 3.47VLIQLDD85 pKa = 3.98TGSSDD90 pKa = 2.79LWVNLDD96 pKa = 3.25EE97 pKa = 5.71GEE99 pKa = 4.42IEE101 pKa = 4.62FSNTTDD107 pKa = 3.79LPAQEE112 pKa = 5.2AYY114 pKa = 10.52GIGQIAGTIQFANVEE129 pKa = 4.4LGDD132 pKa = 4.04NMVPNQAFMNVSNATNFGTIFNDD155 pKa = 4.02GVRR158 pKa = 11.84GILGLAFDD166 pKa = 4.9AGSTIEE172 pKa = 4.09STITEE177 pKa = 4.46AYY179 pKa = 10.5GEE181 pKa = 4.12DD182 pKa = 3.95SEE184 pKa = 5.71LGEE187 pKa = 4.37SFLTNVFQQDD197 pKa = 3.05TSKK200 pKa = 10.98PLFTVQLGRR209 pKa = 11.84ADD211 pKa = 3.86DD212 pKa = 4.05PQYY215 pKa = 8.32TTEE218 pKa = 4.01GAFTIGEE225 pKa = 4.27YY226 pKa = 10.85LPDD229 pKa = 3.72YY230 pKa = 8.57EE231 pKa = 5.17TIEE234 pKa = 4.78DD235 pKa = 3.83MPKK238 pKa = 10.57LEE240 pKa = 4.4RR241 pKa = 11.84FPNNGTGAAPRR252 pKa = 11.84WSTVMSGMTVNGEE265 pKa = 3.68PFQFNTSGVPGTPEE279 pKa = 3.89GSVVAVLDD287 pKa = 3.59TGFTFPPIPKK297 pKa = 8.86PAVDD301 pKa = 5.13AIYY304 pKa = 10.64GGIDD308 pKa = 3.11GAYY311 pKa = 9.63YY312 pKa = 8.59DD313 pKa = 4.71TNSSLWIVPCNKK325 pKa = 9.11ATTLEE330 pKa = 4.24FQFGEE335 pKa = 4.3LSVPIHH341 pKa = 6.45PLDD344 pKa = 3.49LTTIVQINNTQVCVNTFRR362 pKa = 11.84PSTFPVNTQFDD373 pKa = 4.78LVLGDD378 pKa = 4.55AFLKK382 pKa = 10.56NVYY385 pKa = 10.7ASFNYY390 pKa = 10.44GNMSEE395 pKa = 4.77DD396 pKa = 3.33AVPYY400 pKa = 8.99MQLLPTTDD408 pKa = 2.65MHH410 pKa = 6.64AASKK414 pKa = 10.65EE415 pKa = 3.87FDD417 pKa = 3.65SVRR420 pKa = 11.84SAMYY424 pKa = 10.06AQAAASAAASSASASAASAYY444 pKa = 9.9AALVSGSASTACSTAMPTATPLFASAWSSSAPSAVMTDD482 pKa = 3.27STPAIIASPDD492 pKa = 3.31LSGLGNGNSSNPTAASSANGSSATDD517 pKa = 3.4ASSTDD522 pKa = 3.56PAATDD527 pKa = 3.45ASSTDD532 pKa = 3.4GSSATATSDD541 pKa = 2.79TSTPTSTDD549 pKa = 3.18DD550 pKa = 3.59SSASTTSDD558 pKa = 2.79TSASSPTDD566 pKa = 3.12SATSSTATSTDD577 pKa = 2.84SSTDD581 pKa = 3.32PSATSTDD588 pKa = 3.24SSTDD592 pKa = 3.32PSATSTDD599 pKa = 3.24SSTDD603 pKa = 3.27PSATSTASAADD614 pKa = 3.86PNATSTDD621 pKa = 3.5SSSDD625 pKa = 3.41TAGTTSTASAADD637 pKa = 3.77PSATSSGDD645 pKa = 3.25SSSGGNSSSTGSLPIDD661 pKa = 4.08GSSSSDD667 pKa = 3.41DD668 pKa = 3.58GSGSLQEE675 pKa = 4.22NTSLLDD681 pKa = 3.34NSGGSKK687 pKa = 10.3QSTFGNSLYY696 pKa = 11.08GDD698 pKa = 4.19GGNGYY703 pKa = 10.32ARR705 pKa = 11.84AFRR708 pKa = 11.84RR709 pKa = 11.84SYY711 pKa = 10.93RR712 pKa = 11.84EE713 pKa = 3.6PTKK716 pKa = 10.24TVHH719 pKa = 7.44DD720 pKa = 4.78CLTPMIEE727 pKa = 4.37EE728 pKa = 4.09YY729 pKa = 10.93GALLFALIAGTFIISFALCLVTVVLAIRR757 pKa = 11.84NHH759 pKa = 5.61SRR761 pKa = 11.84SQARR765 pKa = 11.84KK766 pKa = 7.39RR767 pKa = 11.84AEE769 pKa = 4.05YY770 pKa = 10.05FVLEE774 pKa = 4.31ANAEE778 pKa = 4.07AEE780 pKa = 4.38ADD782 pKa = 3.76PEE784 pKa = 4.29AACTATYY791 pKa = 9.88HH792 pKa = 6.56YY793 pKa = 10.92SDD795 pKa = 5.47DD796 pKa = 3.97YY797 pKa = 12.02

Molecular weight: 82.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A165THV8|A0A165THV8_9APHY Uncharacterized protein OS=Daedalea quercina L-15889 OX=1314783 GN=DAEQUDRAFT_721516 PE=4 SV=1
PP1 pKa = 6.32SARR4 pKa = 11.84RR5 pKa = 11.84GRR7 pKa = 11.84AASPTKK13 pKa = 8.96PTSTIAPTKK22 pKa = 9.38RR23 pKa = 11.84TAPPVKK29 pKa = 9.93RR30 pKa = 11.84ATSPTKK36 pKa = 10.42RR37 pKa = 11.84ATSPAKK43 pKa = 10.18RR44 pKa = 11.84AASPIKK50 pKa = 10.28RR51 pKa = 11.84AAPPVKK57 pKa = 10.03RR58 pKa = 11.84AASPVKK64 pKa = 10.21RR65 pKa = 11.84AASPVKK71 pKa = 10.35RR72 pKa = 11.84AGSPVKK78 pKa = 10.32RR79 pKa = 11.84AASPVKK85 pKa = 10.21RR86 pKa = 11.84AASPVKK92 pKa = 10.27RR93 pKa = 11.84AA94 pKa = 3.43

Molecular weight: 9.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12169

1

12170

4971741

49

5065

408.5

45.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.359 ± 0.02

1.314 ± 0.009

5.558 ± 0.016

5.908 ± 0.021

3.459 ± 0.014

6.629 ± 0.02

2.565 ± 0.013

4.441 ± 0.014

4.081 ± 0.02

9.172 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.156 ± 0.009

3.012 ± 0.01

6.68 ± 0.029

3.688 ± 0.014

6.769 ± 0.024

8.453 ± 0.035

5.969 ± 0.017

6.621 ± 0.016

1.456 ± 0.009

2.708 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski