Cacao Bacilliform SriLanka Virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; unclassified Badnavirus

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H4U9A0|A0A2H4U9A0_9VIRU ORF2 protein OS=Cacao Bacilliform SriLanka Virus OX=2056878 PE=4 SV=1
MM1 pKa = 7.44SGSSSSSRR9 pKa = 11.84IIATKK14 pKa = 10.02SYY16 pKa = 10.66KK17 pKa = 10.24DD18 pKa = 4.03AILASDD24 pKa = 4.17EE25 pKa = 4.11VDD27 pKa = 3.61PPAVGFAKK35 pKa = 10.45ASEE38 pKa = 4.34GTASNLATIVKK49 pKa = 9.59QNNLIIALLTVVAEE63 pKa = 4.89RR64 pKa = 11.84ITEE67 pKa = 4.01KK68 pKa = 10.38EE69 pKa = 4.02LPIVEE74 pKa = 4.33SSSAGLEE81 pKa = 3.97EE82 pKa = 4.67ALDD85 pKa = 4.69EE86 pKa = 4.75ITDD89 pKa = 3.48QLRR92 pKa = 11.84NLKK95 pKa = 10.09LRR97 pKa = 11.84STGKK101 pKa = 10.2EE102 pKa = 3.62PVITEE107 pKa = 4.41TKK109 pKa = 9.76GKK111 pKa = 10.48LYY113 pKa = 10.69VFKK116 pKa = 10.92DD117 pKa = 3.15PLQILKK123 pKa = 10.3EE124 pKa = 4.18EE125 pKa = 4.14KK126 pKa = 10.26EE127 pKa = 4.03KK128 pKa = 11.22AKK130 pKa = 10.65RR131 pKa = 3.46

Molecular weight: 14.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H4U997|A0A2H4U997_9VIRU Reverse transcriptase OS=Cacao Bacilliform SriLanka Virus OX=2056878 PE=4 SV=1
MM1 pKa = 7.29SARR4 pKa = 11.84RR5 pKa = 11.84SDD7 pKa = 3.44TGSSSEE13 pKa = 4.08ANQGSSANDD22 pKa = 3.47ADD24 pKa = 4.5PGFSTTQEE32 pKa = 3.63LWEE35 pKa = 4.29LLKK38 pKa = 10.43PSKK41 pKa = 9.97PITMSEE47 pKa = 3.89DD48 pKa = 2.9LSNRR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84FTEE57 pKa = 3.48IQKK60 pKa = 10.01RR61 pKa = 11.84AKK63 pKa = 9.51EE64 pKa = 3.81RR65 pKa = 11.84AKK67 pKa = 10.85AAVEE71 pKa = 4.27SALSEE76 pKa = 4.29YY77 pKa = 10.82EE78 pKa = 4.45GILSIRR84 pKa = 11.84RR85 pKa = 11.84EE86 pKa = 4.1ATRR89 pKa = 11.84QLATNDD95 pKa = 3.76NAWGDD100 pKa = 3.88VLPLRR105 pKa = 11.84VEE107 pKa = 4.73EE108 pKa = 3.74IRR110 pKa = 11.84EE111 pKa = 4.01IKK113 pKa = 9.57RR114 pKa = 11.84AKK116 pKa = 9.74HH117 pKa = 5.97DD118 pKa = 4.42LYY120 pKa = 11.41LALDD124 pKa = 3.56KK125 pKa = 10.52STQYY129 pKa = 11.43AHH131 pKa = 7.51LYY133 pKa = 9.28

Molecular weight: 15.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

2179

131

1772

544.8

62.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.828 ± 1.794

1.377 ± 0.658

4.956 ± 0.63

9.087 ± 1.037

3.488 ± 0.959

5.232 ± 1.068

1.79 ± 0.425

6.792 ± 0.396

7.664 ± 0.69

9.087 ± 1.528

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.249 ± 0.596

4.497 ± 0.51

4.727 ± 0.625

5.507 ± 0.957

6.241 ± 0.609

6.884 ± 1.808

5.048 ± 0.491

5.002 ± 0.478

1.377 ± 0.327

3.167 ± 0.376
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski