Capybara microvirus Cap1_SP_137

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 7.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4A0|A0A4P8W4A0_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_137 OX=2585385 PE=4 SV=1
MM1 pKa = 7.66TEE3 pKa = 4.38TISKK7 pKa = 9.67IDD9 pKa = 3.77EE10 pKa = 4.35LRR12 pKa = 11.84QQAYY16 pKa = 6.39EE17 pKa = 4.0TGDD20 pKa = 3.36NVLRR24 pKa = 11.84WHH26 pKa = 7.56DD27 pKa = 3.81EE28 pKa = 3.91QEE30 pKa = 3.84KK31 pKa = 11.12DD32 pKa = 3.68FLIVQEE38 pKa = 4.29KK39 pKa = 9.2NDD41 pKa = 3.67YY42 pKa = 10.04YY43 pKa = 11.44KK44 pKa = 10.12RR45 pKa = 11.84TAAAAKK51 pKa = 9.93GVTIYY56 pKa = 11.2EE57 pKa = 4.33MIQIYY62 pKa = 10.66GSVDD66 pKa = 2.76AAAAATGEE74 pKa = 4.47VPASAMIDD82 pKa = 3.31ASDD85 pKa = 3.7VPQFGGNVDD94 pKa = 4.59LDD96 pKa = 3.82ALANLLLAKK105 pKa = 10.36AQAAQQANNAAKK117 pKa = 8.9TAQNTTTDD125 pKa = 3.41KK126 pKa = 11.52TEE128 pKa = 5.24DD129 pKa = 3.54NPQQ132 pKa = 2.95

Molecular weight: 14.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4C0|A0A4P8W4C0_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_137 OX=2585385 PE=3 SV=1
MM1 pKa = 7.7RR2 pKa = 11.84VACPPRR8 pKa = 11.84AKK10 pKa = 10.35NLKK13 pKa = 8.15NACAPRR19 pKa = 11.84HH20 pKa = 6.01AIRR23 pKa = 11.84AKK25 pKa = 10.41KK26 pKa = 8.24PTIKK30 pKa = 10.06IFQSYY35 pKa = 10.3LSIYY39 pKa = 10.19LGARR43 pKa = 11.84GQGAKK48 pKa = 10.16RR49 pKa = 11.84LPTNLPNEE57 pKa = 4.13VLLFSLSPALSGLSLLRR74 pKa = 11.84FLFVASVLALEE85 pKa = 4.78CPSLKK90 pKa = 10.9GNN92 pKa = 3.75

Molecular weight: 9.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

1454

70

565

161.6

18.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.428 ± 1.44

1.169 ± 0.394

5.227 ± 0.738

5.021 ± 0.518

4.402 ± 0.504

6.671 ± 0.939

1.719 ± 0.253

5.227 ± 0.794

6.809 ± 1.4

10.316 ± 1.113

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.132 ± 0.574

6.259 ± 0.944

4.677 ± 0.721

4.127 ± 0.685

5.708 ± 0.768

5.846 ± 0.719

5.915 ± 0.479

5.777 ± 0.693

1.1 ± 0.224

4.47 ± 0.778
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski