Amino acid dipepetide frequency for Rhizoctonia solani RNA virus HN008

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
9.528AlaAla: 9.528 ± 1.641
1.243AlaCys: 1.243 ± 0.275
4.557AlaAsp: 4.557 ± 0.965
5.8AlaGlu: 5.8 ± 0.098
2.486AlaPhe: 2.486 ± 1.226
6.214AlaGly: 6.214 ± 3.362
2.486AlaHis: 2.486 ± 0.634
7.457AlaIle: 7.457 ± 0.126
2.486AlaLys: 2.486 ± 1.142
10.771AlaLeu: 10.771 ± 1.595
1.243AlaMet: 1.243 ± 0.909
7.871AlaAsn: 7.871 ± 1.613
4.143AlaPro: 4.143 ± 1.254
1.657AlaGln: 1.657 ± 0.62
5.385AlaArg: 5.385 ± 0.979
4.143AlaSer: 4.143 ± 0.522
4.143AlaThr: 4.143 ± 0.07
10.771AlaVal: 10.771 ± 0.41
1.657AlaTrp: 1.657 ± 0.028
3.314AlaTyr: 3.314 ± 0.536
0.0AlaXaa: 0.0 ± 0.0
Cys
2.486CysAla: 2.486 ± 1.226
0.0CysCys: 0.0 ± 0.0
0.414CysAsp: 0.414 ± 0.303
1.243CysGlu: 1.243 ± 0.275
2.071CysPhe: 2.071 ± 0.331
1.657CysGly: 1.657 ± 0.62
0.0CysHis: 0.0 ± 0.0
0.414CysIle: 0.414 ± 0.303
0.0CysLys: 0.0 ± 0.0
1.243CysLeu: 1.243 ± 0.275
0.0CysMet: 0.0 ± 0.0
0.829CysAsn: 0.829 ± 0.578
0.0CysPro: 0.0 ± 0.0
0.829CysGln: 0.829 ± 0.014
1.243CysArg: 1.243 ± 0.867
1.657CysSer: 1.657 ± 0.564
0.829CysThr: 0.829 ± 0.578
0.829CysVal: 0.829 ± 0.578
0.0CysTrp: 0.0 ± 0.0
0.829CysTyr: 0.829 ± 0.578
0.0CysXaa: 0.0 ± 0.0
Asp
7.871AspAla: 7.871 ± 0.429
0.829AspCys: 0.829 ± 0.578
1.657AspAsp: 1.657 ± 0.62
3.314AspGlu: 3.314 ± 0.648
2.071AspPhe: 2.071 ± 0.853
4.557AspGly: 4.557 ± 0.965
0.829AspHis: 0.829 ± 0.606
2.071AspIle: 2.071 ± 0.261
2.071AspLys: 2.071 ± 0.853
3.314AspLeu: 3.314 ± 0.648
1.657AspMet: 1.657 ± 0.028
1.657AspAsn: 1.657 ± 0.028
0.829AspPro: 0.829 ± 0.014
2.071AspGln: 2.071 ± 0.923
2.9AspArg: 2.9 ± 0.839
0.829AspSer: 0.829 ± 0.578
2.486AspThr: 2.486 ± 0.55
5.385AspVal: 5.385 ± 0.387
1.657AspTrp: 1.657 ± 0.62
2.9AspTyr: 2.9 ± 0.839
0.0AspXaa: 0.0 ± 0.0
Glu
5.385GluAla: 5.385 ± 0.979
0.414GluCys: 0.414 ± 0.303
2.486GluAsp: 2.486 ± 0.55
2.071GluGlu: 2.071 ± 0.853
1.657GluPhe: 1.657 ± 1.156
3.314GluGly: 3.314 ± 0.056
2.071GluHis: 2.071 ± 0.923
4.557GluIle: 4.557 ± 1.403
2.071GluLys: 2.071 ± 1.445
5.8GluLeu: 5.8 ± 0.494
2.9GluMet: 2.9 ± 0.345
2.071GluAsn: 2.071 ± 0.261
3.314GluPro: 3.314 ± 0.056
2.486GluGln: 2.486 ± 0.634
4.143GluArg: 4.143 ± 0.522
3.314GluSer: 3.314 ± 0.056
1.657GluThr: 1.657 ± 0.564
5.8GluVal: 5.8 ± 0.494
0.829GluTrp: 0.829 ± 0.578
1.243GluTyr: 1.243 ± 0.275
0.0GluXaa: 0.0 ± 0.0
Phe
1.657PheAla: 1.657 ± 0.028
0.829PheCys: 0.829 ± 0.014
3.314PheAsp: 3.314 ± 0.056
2.071PheGlu: 2.071 ± 0.261
0.829PhePhe: 0.829 ± 0.578
5.385PheGly: 5.385 ± 0.979
0.414PheHis: 0.414 ± 0.289
0.829PheIle: 0.829 ± 0.014
1.243PheLys: 1.243 ± 0.867
1.657PheLeu: 1.657 ± 0.028
0.829PheMet: 0.829 ± 0.014
2.071PheAsn: 2.071 ± 0.261
1.657PhePro: 1.657 ± 1.156
0.0PheGln: 0.0 ± 0.0
2.9PheArg: 2.9 ± 0.345
2.9PheSer: 2.9 ± 0.247
1.243PheThr: 1.243 ± 0.275
2.486PheVal: 2.486 ± 1.142
1.657PheTrp: 1.657 ± 0.564
2.071PheTyr: 2.071 ± 0.261
0.0PheXaa: 0.0 ± 0.0
Gly
5.8GlyAla: 5.8 ± 0.69
0.829GlyCys: 0.829 ± 0.606
3.728GlyAsp: 3.728 ± 2.01
4.557GlyGlu: 4.557 ± 1.557
1.657GlyPhe: 1.657 ± 0.564
5.385GlyGly: 5.385 ± 2.163
1.657GlyHis: 1.657 ± 0.564
2.486GlyIle: 2.486 ± 0.042
4.143GlyLys: 4.143 ± 1.114
7.871GlyLeu: 7.871 ± 0.755
2.9GlyMet: 2.9 ± 0.937
2.9GlyAsn: 2.9 ± 0.937
1.657GlyPro: 1.657 ± 1.212
2.071GlyGln: 2.071 ± 0.331
4.143GlyArg: 4.143 ± 0.522
6.214GlySer: 6.214 ± 0.401
3.728GlyThr: 3.728 ± 0.359
7.457GlyVal: 7.457 ± 3.679
2.486GlyTrp: 2.486 ± 0.042
2.486GlyTyr: 2.486 ± 0.042
0.0GlyXaa: 0.0 ± 0.0
His
2.071HisAla: 2.071 ± 0.261
0.414HisCys: 0.414 ± 0.303
1.243HisAsp: 1.243 ± 0.275
3.314HisGlu: 3.314 ± 0.536
1.243HisPhe: 1.243 ± 0.317
0.414HisGly: 0.414 ± 0.303
0.829HisHis: 0.829 ± 0.606
2.071HisIle: 2.071 ± 0.853
2.486HisLys: 2.486 ± 1.142
0.829HisLeu: 0.829 ± 0.014
0.0HisMet: 0.0 ± 0.0
0.414HisAsn: 0.414 ± 0.303
1.243HisPro: 1.243 ± 0.317
0.414HisGln: 0.414 ± 0.303
1.243HisArg: 1.243 ± 0.275
1.657HisSer: 1.657 ± 0.62
0.829HisThr: 0.829 ± 0.606
0.829HisVal: 0.829 ± 0.014
0.829HisTrp: 0.829 ± 0.578
0.414HisTyr: 0.414 ± 0.303
0.0HisXaa: 0.0 ± 0.0
Ile
3.728IleAla: 3.728 ± 0.233
0.414IleCys: 0.414 ± 0.289
4.143IleAsp: 4.143 ± 0.07
2.071IleGlu: 2.071 ± 0.853
1.243IlePhe: 1.243 ± 0.867
2.9IleGly: 2.9 ± 0.247
2.071IleHis: 2.071 ± 0.923
0.414IleIle: 0.414 ± 0.303
1.657IleLys: 1.657 ± 1.156
3.314IleLeu: 3.314 ± 1.128
0.414IleMet: 0.414 ± 0.303
1.657IleAsn: 1.657 ± 0.62
2.071IlePro: 2.071 ± 0.331
0.414IleGln: 0.414 ± 0.289
2.486IleArg: 2.486 ± 0.55
1.657IleSer: 1.657 ± 0.564
2.486IleThr: 2.486 ± 0.042
3.728IleVal: 3.728 ± 0.359
0.414IleTrp: 0.414 ± 0.303
0.829IleTyr: 0.829 ± 0.606
0.0IleXaa: 0.0 ± 0.0
Lys
2.071LysAla: 2.071 ± 0.853
0.829LysCys: 0.829 ± 0.014
0.829LysAsp: 0.829 ± 0.014
2.071LysGlu: 2.071 ± 1.445
0.414LysPhe: 0.414 ± 0.303
1.657LysGly: 1.657 ± 0.564
0.414LysHis: 0.414 ± 0.289
1.243LysIle: 1.243 ± 0.275
1.657LysLys: 1.657 ± 1.156
4.971LysLeu: 4.971 ± 0.508
1.657LysMet: 1.657 ± 0.62
0.829LysAsn: 0.829 ± 0.014
2.486LysPro: 2.486 ± 1.735
1.657LysGln: 1.657 ± 1.156
2.486LysArg: 2.486 ± 1.735
1.657LysSer: 1.657 ± 1.156
2.071LysThr: 2.071 ± 0.261
2.9LysVal: 2.9 ± 0.247
2.071LysTrp: 2.071 ± 1.445
0.829LysTyr: 0.829 ± 0.578
0.0LysXaa: 0.0 ± 0.0
Leu
7.871LeuAla: 7.871 ± 1.021
2.071LeuCys: 2.071 ± 0.853
2.9LeuAsp: 2.9 ± 0.937
4.143LeuGlu: 4.143 ± 0.522
3.728LeuPhe: 3.728 ± 2.01
9.114LeuGly: 9.114 ± 0.154
1.243LeuHis: 1.243 ± 0.317
1.657LeuIle: 1.657 ± 0.564
2.9LeuLys: 2.9 ± 1.431
14.913LeuLeu: 14.913 ± 0.252
3.314LeuMet: 3.314 ± 0.24
9.114LeuAsn: 9.114 ± 1.623
3.728LeuPro: 3.728 ± 0.951
3.314LeuGln: 3.314 ± 0.648
7.871LeuArg: 7.871 ± 1.94
7.457LeuSer: 7.457 ± 1.902
7.871LeuThr: 7.871 ± 1.021
4.143LeuVal: 4.143 ± 0.522
1.657LeuTrp: 1.657 ± 0.564
2.486LeuTyr: 2.486 ± 0.042
0.0LeuXaa: 0.0 ± 0.0
Met
2.9MetAla: 2.9 ± 0.247
1.243MetCys: 1.243 ± 0.275
1.243MetAsp: 1.243 ± 0.317
2.071MetGlu: 2.071 ± 0.923
2.071MetPhe: 2.071 ± 0.331
0.414MetGly: 0.414 ± 0.303
1.243MetHis: 1.243 ± 0.275
1.657MetIle: 1.657 ± 0.564
0.829MetLys: 0.829 ± 0.014
2.9MetLeu: 2.9 ± 0.345
1.657MetMet: 1.657 ± 0.028
1.243MetAsn: 1.243 ± 0.317
0.414MetPro: 0.414 ± 0.303
0.414MetGln: 0.414 ± 0.289
2.9MetArg: 2.9 ± 1.529
2.071MetSer: 2.071 ± 0.331
0.414MetThr: 0.414 ± 0.303
1.657MetVal: 1.657 ± 1.212
0.0MetTrp: 0.0 ± 0.0
0.414MetTyr: 0.414 ± 0.289
0.0MetXaa: 0.0 ± 0.0
Asn
4.971AsnAla: 4.971 ± 0.508
0.829AsnCys: 0.829 ± 0.014
1.657AsnAsp: 1.657 ± 1.212
3.314AsnGlu: 3.314 ± 0.056
2.486AsnPhe: 2.486 ± 0.042
2.071AsnGly: 2.071 ± 0.331
0.829AsnHis: 0.829 ± 0.606
1.657AsnIle: 1.657 ± 0.028
1.243AsnLys: 1.243 ± 0.867
4.143AsnLeu: 4.143 ± 1.254
1.657AsnMet: 1.657 ± 0.028
1.657AsnAsn: 1.657 ± 0.028
2.9AsnPro: 2.9 ± 0.345
1.243AsnGln: 1.243 ± 0.317
5.385AsnArg: 5.385 ± 1.39
3.728AsnSer: 3.728 ± 0.359
3.728AsnThr: 3.728 ± 0.825
4.557AsnVal: 4.557 ± 1.557
0.829AsnTrp: 0.829 ± 0.014
0.829AsnTyr: 0.829 ± 0.014
0.0AsnXaa: 0.0 ± 0.0
Pro
4.557ProAla: 4.557 ± 1.557
0.0ProCys: 0.0 ± 0.0
3.314ProAsp: 3.314 ± 0.536
3.314ProGlu: 3.314 ± 1.721
0.829ProPhe: 0.829 ± 0.014
2.071ProGly: 2.071 ± 0.331
0.414ProHis: 0.414 ± 0.289
2.9ProIle: 2.9 ± 0.937
0.829ProLys: 0.829 ± 0.606
2.486ProLeu: 2.486 ± 0.042
0.0ProMet: 0.0 ± 0.0
0.829ProAsn: 0.829 ± 0.014
1.243ProPro: 1.243 ± 0.275
0.414ProGln: 0.414 ± 0.303
1.657ProArg: 1.657 ± 0.62
4.557ProSer: 4.557 ± 0.811
2.071ProThr: 2.071 ± 0.331
5.8ProVal: 5.8 ± 0.69
0.829ProTrp: 0.829 ± 0.014
1.243ProTyr: 1.243 ± 0.317
0.0ProXaa: 0.0 ± 0.0
Gln
3.314GlnAla: 3.314 ± 0.648
0.829GlnCys: 0.829 ± 0.578
1.657GlnAsp: 1.657 ± 0.62
1.657GlnGlu: 1.657 ± 1.212
1.657GlnPhe: 1.657 ± 0.564
3.314GlnGly: 3.314 ± 1.128
0.829GlnHis: 0.829 ± 0.578
1.657GlnIle: 1.657 ± 1.212
0.829GlnLys: 0.829 ± 0.578
4.971GlnLeu: 4.971 ± 0.508
0.0GlnMet: 0.0 ± 0.0
0.414GlnAsn: 0.414 ± 0.303
2.071GlnPro: 2.071 ± 0.923
0.414GlnGln: 0.414 ± 0.289
2.9GlnArg: 2.9 ± 0.937
0.414GlnSer: 0.414 ± 0.303
1.243GlnThr: 1.243 ± 0.317
1.243GlnVal: 1.243 ± 0.275
0.0GlnTrp: 0.0 ± 0.0
1.657GlnTyr: 1.657 ± 0.028
0.0GlnXaa: 0.0 ± 0.0
Arg
7.042ArgAla: 7.042 ± 0.177
1.243ArgCys: 1.243 ± 0.909
3.728ArgAsp: 3.728 ± 0.233
4.971ArgGlu: 4.971 ± 0.508
2.9ArgPhe: 2.9 ± 0.345
4.557ArgGly: 4.557 ± 0.373
0.829ArgHis: 0.829 ± 0.014
1.657ArgIle: 1.657 ± 0.564
1.243ArgLys: 1.243 ± 0.275
6.214ArgLeu: 6.214 ± 0.191
1.243ArgMet: 1.243 ± 0.317
4.143ArgAsn: 4.143 ± 1.254
1.657ArgPro: 1.657 ± 0.62
4.971ArgGln: 4.971 ± 1.1
8.699ArgArg: 8.699 ± 0.443
6.214ArgSer: 6.214 ± 0.191
2.9ArgThr: 2.9 ± 0.839
7.457ArgVal: 7.457 ± 1.651
0.829ArgTrp: 0.829 ± 0.606
1.657ArgTyr: 1.657 ± 0.62
0.0ArgXaa: 0.0 ± 0.0
Ser
5.8SerAla: 5.8 ± 0.098
0.0SerCys: 0.0 ± 0.0
3.728SerAsp: 3.728 ± 0.825
2.071SerGlu: 2.071 ± 1.445
2.9SerPhe: 2.9 ± 0.839
6.628SerGly: 6.628 ± 1.665
1.243SerHis: 1.243 ± 0.317
0.829SerIle: 0.829 ± 0.014
3.314SerLys: 3.314 ± 0.536
7.457SerLeu: 7.457 ± 0.126
1.243SerMet: 1.243 ± 0.317
2.486SerAsn: 2.486 ± 1.818
1.657SerPro: 1.657 ± 0.028
1.657SerGln: 1.657 ± 0.028
6.214SerArg: 6.214 ± 1.585
5.8SerSer: 5.8 ± 1.679
3.728SerThr: 3.728 ± 0.951
6.214SerVal: 6.214 ± 2.177
0.414SerTrp: 0.414 ± 0.289
1.657SerTyr: 1.657 ± 1.156
0.0SerXaa: 0.0 ± 0.0
Thr
5.8ThrAla: 5.8 ± 1.282
0.829ThrCys: 0.829 ± 0.014
4.971ThrAsp: 4.971 ± 0.676
2.9ThrGlu: 2.9 ± 0.839
0.829ThrPhe: 0.829 ± 0.578
3.314ThrGly: 3.314 ± 0.648
1.657ThrHis: 1.657 ± 1.156
2.486ThrIle: 2.486 ± 1.142
1.657ThrLys: 1.657 ± 0.62
5.385ThrLeu: 5.385 ± 0.979
1.657ThrMet: 1.657 ± 0.028
2.071ThrAsn: 2.071 ± 0.853
2.9ThrPro: 2.9 ± 0.247
0.829ThrGln: 0.829 ± 0.578
3.314ThrArg: 3.314 ± 1.24
2.486ThrSer: 2.486 ± 0.042
1.243ThrThr: 1.243 ± 0.275
1.657ThrVal: 1.657 ± 0.028
0.414ThrTrp: 0.414 ± 0.289
2.071ThrTyr: 2.071 ± 0.923
0.0ThrXaa: 0.0 ± 0.0
Val
9.114ValAla: 9.114 ± 1.93
2.071ValCys: 2.071 ± 0.261
3.314ValAsp: 3.314 ± 0.536
4.557ValGlu: 4.557 ± 0.219
2.486ValPhe: 2.486 ± 0.042
7.042ValGly: 7.042 ± 0.415
1.657ValHis: 1.657 ± 0.564
1.243ValIle: 1.243 ± 0.909
2.486ValLys: 2.486 ± 0.55
7.871ValLeu: 7.871 ± 0.429
4.143ValMet: 4.143 ± 0.662
3.314ValAsn: 3.314 ± 0.056
4.557ValPro: 4.557 ± 0.811
4.143ValGln: 4.143 ± 1.254
4.971ValArg: 4.971 ± 0.676
4.971ValSer: 4.971 ± 0.676
3.314ValThr: 3.314 ± 0.648
7.457ValVal: 7.457 ± 2.494
0.829ValTrp: 0.829 ± 0.014
3.728ValTyr: 3.728 ± 0.233
0.0ValXaa: 0.0 ± 0.0
Trp
1.243TrpAla: 1.243 ± 0.317
1.243TrpCys: 1.243 ± 0.867
0.829TrpAsp: 0.829 ± 0.014
0.414TrpGlu: 0.414 ± 0.289
0.0TrpPhe: 0.0 ± 0.0
1.243TrpGly: 1.243 ± 0.317
2.071TrpHis: 2.071 ± 0.853
0.414TrpIle: 0.414 ± 0.289
0.0TrpLys: 0.0 ± 0.0
2.9TrpLeu: 2.9 ± 0.839
0.0TrpMet: 0.0 ± 0.0
0.829TrpAsn: 0.829 ± 0.014
0.414TrpPro: 0.414 ± 0.289
0.829TrpGln: 0.829 ± 0.014
1.657TrpArg: 1.657 ± 0.564
0.414TrpSer: 0.414 ± 0.289
1.243TrpThr: 1.243 ± 0.317
0.829TrpVal: 0.829 ± 0.606
0.0TrpTrp: 0.0 ± 0.0
1.243TrpTyr: 1.243 ± 0.275
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.143TyrAla: 4.143 ± 0.522
0.414TyrCys: 0.414 ± 0.303
1.243TyrAsp: 1.243 ± 0.275
1.657TyrGlu: 1.657 ± 0.028
2.486TyrPhe: 2.486 ± 0.634
2.9TyrGly: 2.9 ± 0.247
0.0TyrHis: 0.0 ± 0.0
0.414TyrIle: 0.414 ± 0.289
1.657TyrLys: 1.657 ± 0.564
2.9TyrLeu: 2.9 ± 0.839
0.829TyrMet: 0.829 ± 0.014
3.314TyrAsn: 3.314 ± 1.128
0.414TyrPro: 0.414 ± 0.303
1.243TyrGln: 1.243 ± 0.317
1.657TyrArg: 1.657 ± 0.62
2.9TyrSer: 2.9 ± 0.937
1.243TyrThr: 1.243 ± 0.275
2.071TyrVal: 2.071 ± 0.853
0.414TyrTrp: 0.414 ± 0.289
1.657TyrTyr: 1.657 ± 0.564
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2415 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski