Bermuda grass latent virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Panicovirus; unclassified Panicovirus

Average proteome isoelectric point is 8.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L6C7T1|A0A1L6C7T1_9TOMB Capsid protein OS=Bermuda grass latent virus OX=1930269 PE=3 SV=1
MM1 pKa = 7.45ATGKK5 pKa = 8.66CHH7 pKa = 6.99CPDD10 pKa = 3.96SLWTPGLLAICIVLALCLVARR31 pKa = 11.84STSEE35 pKa = 3.8PPIISPPVFHH45 pKa = 6.48TVYY48 pKa = 10.5HH49 pKa = 5.88CEE51 pKa = 3.8KK52 pKa = 8.61YY53 pKa = 10.76QNIEE57 pKa = 3.89VQKK60 pKa = 11.04

Molecular weight: 6.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L6C7S8|A0A1L6C7S8_9TOMB Putative movement protein 1 OS=Bermuda grass latent virus OX=1930269 PE=4 SV=1
MM1 pKa = 7.36APVVVVNNLPPPGTVAARR19 pKa = 11.84EE20 pKa = 4.15IKK22 pKa = 10.46VLGARR27 pKa = 11.84VVEE30 pKa = 3.74VDD32 pKa = 4.28LWNEE36 pKa = 3.93QCQLPPRR43 pKa = 11.84TLWVRR48 pKa = 11.84RR49 pKa = 11.84DD50 pKa = 3.36PRR52 pKa = 11.84AWGVDD57 pKa = 2.74RR58 pKa = 11.84DD59 pKa = 4.13GQVWLTRR66 pKa = 11.84KK67 pKa = 10.11SYY69 pKa = 10.44FKK71 pKa = 10.87SLLVPAVTPYY81 pKa = 10.76SPSPSFQTCSIRR93 pKa = 11.84QTVRR97 pKa = 11.84LIPDD101 pKa = 3.25VRR103 pKa = 11.84NSSQGTPHH111 pKa = 6.56CTPNTNGTCWHH122 pKa = 6.63SNGHH126 pKa = 4.86QVVQRR131 pKa = 11.84LHH133 pKa = 6.99LEE135 pKa = 3.8TWFF138 pKa = 3.91

Molecular weight: 15.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1755

60

912

292.5

33.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.578 ± 0.734

2.279 ± 0.386

4.387 ± 0.395

5.356 ± 1.052

3.818 ± 0.469

5.47 ± 0.541

2.564 ± 0.228

4.558 ± 0.533

6.04 ± 0.935

8.547 ± 0.834

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.652 ± 0.261

3.248 ± 0.556

5.527 ± 1.218

4.843 ± 0.616

7.293 ± 0.409

7.35 ± 0.657

7.009 ± 0.71

6.895 ± 1.022

1.481 ± 0.384

4.046 ± 0.578
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski