Oceanimonas sp. (strain GK1 / IBRC-M 10197)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanimonas; unclassified Oceanimonas

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3190 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H2FWV9|H2FWV9_OCESG Lipopolysaccharide assembly protein B OS=Oceanimonas sp. (strain GK1 / IBRC-M 10197) OX=511062 GN=lapB PE=3 SV=1
MM1 pKa = 7.68KK2 pKa = 9.38KK3 pKa = 9.08TILALTIPALFATSASAVTVYY24 pKa = 10.62SDD26 pKa = 3.61EE27 pKa = 4.27GAQVDD32 pKa = 3.41IYY34 pKa = 11.54GRR36 pKa = 11.84VQFDD40 pKa = 3.28GGEE43 pKa = 4.17LDD45 pKa = 4.27HH46 pKa = 7.83QNDD49 pKa = 4.13SNGKK53 pKa = 6.77EE54 pKa = 4.12VKK56 pKa = 10.19SEE58 pKa = 4.1SFGTDD63 pKa = 2.56GSARR67 pKa = 11.84LGVNMSYY74 pKa = 11.5ALNNDD79 pKa = 2.44VDD81 pKa = 5.52LIGKK85 pKa = 8.14LEE87 pKa = 3.96WQVAAEE93 pKa = 4.49ASDD96 pKa = 3.79DD97 pKa = 4.05SKK99 pKa = 11.67FDD101 pKa = 4.46ARR103 pKa = 11.84YY104 pKa = 8.28AWAGFRR110 pKa = 11.84FMDD113 pKa = 3.7TTEE116 pKa = 4.0LTFGRR121 pKa = 11.84SVDD124 pKa = 3.76PLAQAIYY131 pKa = 8.87LTDD134 pKa = 3.23VFNIFGAGITYY145 pKa = 10.21GSEE148 pKa = 3.78FSISDD153 pKa = 3.6KK154 pKa = 11.43ADD156 pKa = 3.48DD157 pKa = 4.77QIMATYY163 pKa = 9.53AANGVDD169 pKa = 4.62LRR171 pKa = 11.84AAYY174 pKa = 10.09AFADD178 pKa = 4.12DD179 pKa = 5.3DD180 pKa = 3.88RR181 pKa = 11.84TDD183 pKa = 3.91FANQANGDD191 pKa = 3.68VAEE194 pKa = 4.37NQWAVSAGYY203 pKa = 7.48TFPFGLGLVAAYY215 pKa = 7.42EE216 pKa = 4.06QQNGYY221 pKa = 9.75EE222 pKa = 4.33KK223 pKa = 10.37TGLTSQNIDD232 pKa = 2.94QDD234 pKa = 3.02VWYY237 pKa = 10.45AGVHH241 pKa = 4.1YY242 pKa = 9.04TLDD245 pKa = 3.35GFYY248 pKa = 10.51FAALYY253 pKa = 10.55SDD255 pKa = 4.03RR256 pKa = 11.84QRR258 pKa = 11.84DD259 pKa = 3.45TGTAAGDD266 pKa = 4.03DD267 pKa = 3.68EE268 pKa = 4.45GTAYY272 pKa = 9.95EE273 pKa = 4.8LHH275 pKa = 6.15AQYY278 pKa = 11.21NVDD281 pKa = 3.51AWTLMAQYY289 pKa = 10.69SKK291 pKa = 11.59EE292 pKa = 4.09EE293 pKa = 3.8FDD295 pKa = 3.62AAGATEE301 pKa = 4.96EE302 pKa = 4.58YY303 pKa = 11.0DD304 pKa = 3.95SIDD307 pKa = 4.97DD308 pKa = 3.53ITLGVQYY315 pKa = 11.16DD316 pKa = 4.09LTSKK320 pKa = 9.03TKK322 pKa = 10.55LYY324 pKa = 10.83AEE326 pKa = 4.29YY327 pKa = 10.29VISDD331 pKa = 4.25SEE333 pKa = 4.35VDD335 pKa = 3.16TSGAKK340 pKa = 9.8KK341 pKa = 10.35DD342 pKa = 3.65DD343 pKa = 4.02LYY345 pKa = 11.73GVGIQYY351 pKa = 10.53NFF353 pKa = 3.35

Molecular weight: 38.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H2FYZ9|H2FYZ9_OCESG RNA-binding protein Hfq OS=Oceanimonas sp. (strain GK1 / IBRC-M 10197) OX=511062 GN=hfq PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.14RR12 pKa = 11.84KK13 pKa = 9.13RR14 pKa = 11.84SHH16 pKa = 6.17GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 9.16VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.29GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3190

0

3190

1032523

32

2846

323.7

35.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.771 ± 0.055

1.021 ± 0.014

5.226 ± 0.032

6.145 ± 0.039

3.587 ± 0.031

8.029 ± 0.042

2.477 ± 0.022

4.727 ± 0.036

3.293 ± 0.038

12.149 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.552 ± 0.022

3.041 ± 0.02

4.713 ± 0.028

4.668 ± 0.04

6.547 ± 0.048

5.263 ± 0.033

4.849 ± 0.034

7.009 ± 0.04

1.418 ± 0.018

2.515 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski