Capybara microvirus Cap3_SP_188

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVR6|A0A4V1FVR6_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_188 OX=2585421 PE=3 SV=1
MM1 pKa = 7.42FLYY4 pKa = 10.65SIYY7 pKa = 10.91DD8 pKa = 3.47KK9 pKa = 11.14VASEE13 pKa = 4.05FSYY16 pKa = 10.73PIVLKK21 pKa = 10.21NDD23 pKa = 3.21CVAIRR28 pKa = 11.84WFEE31 pKa = 3.92NSVSQLPAQNYY42 pKa = 8.78FDD44 pKa = 4.27YY45 pKa = 11.02EE46 pKa = 4.53LYY48 pKa = 10.73CLSDD52 pKa = 3.17WSSEE56 pKa = 3.95DD57 pKa = 4.96GILSLCKK64 pKa = 10.16RR65 pKa = 11.84KK66 pKa = 9.56IDD68 pKa = 3.75VPMEE72 pKa = 4.01EE73 pKa = 4.54KK74 pKa = 10.78

Molecular weight: 8.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W518|A0A4P8W518_9VIRU Nonstructural protein OS=Capybara microvirus Cap3_SP_188 OX=2585421 PE=4 SV=1
MM1 pKa = 8.14DD2 pKa = 4.03CTFPLTVKK10 pKa = 10.51NPRR13 pKa = 11.84THH15 pKa = 6.41QYY17 pKa = 10.44IKK19 pKa = 10.36VPCGMCIHH27 pKa = 6.43CRR29 pKa = 11.84IAKK32 pKa = 9.33VRR34 pKa = 11.84DD35 pKa = 2.95WSLRR39 pKa = 11.84LIHH42 pKa = 6.87EE43 pKa = 4.28NSLWEE48 pKa = 4.4DD49 pKa = 3.59SCFVTLTYY57 pKa = 10.91NDD59 pKa = 3.67EE60 pKa = 4.25NLPLTNCGKK69 pKa = 9.79MSLYY73 pKa = 10.76KK74 pKa = 10.12PDD76 pKa = 3.69FQNFMKK82 pKa = 10.61RR83 pKa = 11.84LRR85 pKa = 11.84FRR87 pKa = 11.84IPSPIKK93 pKa = 9.9YY94 pKa = 8.35YY95 pKa = 11.13ACGEE99 pKa = 4.16YY100 pKa = 10.45GDD102 pKa = 4.24EE103 pKa = 4.32GNRR106 pKa = 11.84PHH108 pKa = 5.85YY109 pKa = 10.04HH110 pKa = 6.84AIIFGLSCKK119 pKa = 10.27NIRR122 pKa = 11.84DD123 pKa = 5.22FMICWDD129 pKa = 3.71KK130 pKa = 11.66GFVTVKK136 pKa = 9.9PVNAQRR142 pKa = 11.84CRR144 pKa = 11.84YY145 pKa = 7.85VCGYY149 pKa = 8.41IQKK152 pKa = 10.56KK153 pKa = 8.35IRR155 pKa = 11.84KK156 pKa = 8.86DD157 pKa = 3.3PKK159 pKa = 9.77EE160 pKa = 3.75YY161 pKa = 9.92QAAYY165 pKa = 10.34GCLQPPFQLMSRR177 pKa = 11.84GLGLGYY183 pKa = 10.16LEE185 pKa = 4.92KK186 pKa = 10.88NRR188 pKa = 11.84EE189 pKa = 4.29EE190 pKa = 4.12YY191 pKa = 10.14WLTTRR196 pKa = 11.84NTLNGVPLSIPRR208 pKa = 11.84YY209 pKa = 7.6YY210 pKa = 10.78LKK212 pKa = 10.52KK213 pKa = 10.52DD214 pKa = 3.06WFLHH218 pKa = 5.11TKK220 pKa = 10.32VGLKK224 pKa = 10.04SDD226 pKa = 4.03SKK228 pKa = 10.65PATEE232 pKa = 4.09VEE234 pKa = 4.77SYY236 pKa = 11.39DD237 pKa = 4.59SAIQRR242 pKa = 11.84DD243 pKa = 3.37KK244 pKa = 11.45DD245 pKa = 3.62LRR247 pKa = 11.84AKK249 pKa = 10.01TNLKK253 pKa = 9.74KK254 pKa = 10.61RR255 pKa = 11.84KK256 pKa = 9.13LL257 pKa = 3.61

Molecular weight: 30.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1339

74

561

267.8

30.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.796 ± 1.067

1.718 ± 0.81

5.452 ± 0.345

5.527 ± 1.333

4.929 ± 0.65

6.423 ± 1.033

1.792 ± 0.356

5.676 ± 0.347

5.825 ± 1.204

8.215 ± 0.734

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.24 ± 0.44

5.9 ± 0.87

4.63 ± 1.202

4.556 ± 0.872

4.182 ± 0.877

8.215 ± 1.175

5.676 ± 1.156

5.975 ± 0.831

1.419 ± 0.298

4.854 ± 0.521
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski