Peribacillus deserti

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Peribacillus

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4462 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N5M8D9|A0A2N5M8D9_9BACI D-alanine aminotransferase OS=Peribacillus deserti OX=673318 GN=dat PE=3 SV=1
MM1 pKa = 7.51KK2 pKa = 10.44SFVVSFHH9 pKa = 7.01QEE11 pKa = 4.01DD12 pKa = 4.02NVDD15 pKa = 3.08TMQIQKK21 pKa = 10.54LDD23 pKa = 3.59DD24 pKa = 3.85TEE26 pKa = 4.79FDD28 pKa = 3.39QATEE32 pKa = 3.8GGARR36 pKa = 11.84HH37 pKa = 6.68LFDD40 pKa = 6.16LDD42 pKa = 3.75TNIGYY47 pKa = 9.63FIFMDD52 pKa = 4.52AEE54 pKa = 5.18DD55 pKa = 3.82IDD57 pKa = 5.6GDD59 pKa = 4.03VSHH62 pKa = 7.44LMIQFEE68 pKa = 4.82GDD70 pKa = 3.4NEE72 pKa = 4.51SPSAYY77 pKa = 10.35YY78 pKa = 10.6SFSLQDD84 pKa = 3.85FYY86 pKa = 11.78EE87 pKa = 4.9FMALFLSGQEE97 pKa = 4.19PEE99 pKa = 4.64DD100 pKa = 3.81EE101 pKa = 4.27EE102 pKa = 5.04EE103 pKa = 4.53EE104 pKa = 4.5GDD106 pKa = 3.81EE107 pKa = 4.17QEE109 pKa = 4.56YY110 pKa = 11.02GPMHH114 pKa = 6.52HH115 pKa = 7.07LGHH118 pKa = 7.27LLHH121 pKa = 7.07HH122 pKa = 6.51IVEE125 pKa = 4.94EE126 pKa = 4.63GNSLKK131 pKa = 10.7PP132 pKa = 3.52

Molecular weight: 15.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N5M552|A0A2N5M552_9BACI Integrase catalytic domain-containing protein OS=Peribacillus deserti OX=673318 GN=CUU66_12815 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.24QPNKK9 pKa = 8.16RR10 pKa = 11.84KK11 pKa = 9.54HH12 pKa = 5.99SKK14 pKa = 8.91VHH16 pKa = 5.68GFRR19 pKa = 11.84ARR21 pKa = 11.84MSSKK25 pKa = 10.48NGRR28 pKa = 11.84KK29 pKa = 9.07VLAARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.81GRR39 pKa = 11.84KK40 pKa = 8.75VLSAA44 pKa = 4.05

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4462

0

4462

1228183

17

1517

275.3

30.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.237 ± 0.04

0.746 ± 0.011

5.005 ± 0.029

7.321 ± 0.042

4.605 ± 0.032

7.07 ± 0.039

2.108 ± 0.018

7.781 ± 0.032

7.026 ± 0.04

9.855 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.694 ± 0.019

4.301 ± 0.028

3.719 ± 0.022

3.567 ± 0.02

4.179 ± 0.026

6.383 ± 0.031

5.205 ± 0.023

6.677 ± 0.031

1.025 ± 0.015

3.493 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski