Streptomyces sp. Ncost-T10-10d

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces; unclassified Streptomyces

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8519 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C5BK49|A0A1C5BK49_9ACTN Helix-turn-helix domain-containing protein OS=Streptomyces sp. Ncost-T10-10d OX=1839774 GN=GA0115254_105816 PE=4 SV=1
MM1 pKa = 6.84QQDD4 pKa = 4.0APTGSDD10 pKa = 3.37TQDD13 pKa = 3.31LEE15 pKa = 4.09VWIDD19 pKa = 3.38QDD21 pKa = 3.99LCTGDD26 pKa = 4.65GICVQYY32 pKa = 10.96APEE35 pKa = 4.18VFEE38 pKa = 5.9LDD40 pKa = 3.05IDD42 pKa = 3.63GLAYY46 pKa = 10.52VKK48 pKa = 10.91SSDD51 pKa = 5.5DD52 pKa = 4.19EE53 pKa = 4.31LLQDD57 pKa = 4.61KK58 pKa = 10.51GATTPVPLPLLQDD71 pKa = 3.66VVDD74 pKa = 4.35SAKK77 pKa = 10.25EE78 pKa = 3.92CPGDD82 pKa = 4.18CIHH85 pKa = 6.36VRR87 pKa = 11.84RR88 pKa = 11.84VSDD91 pKa = 3.3RR92 pKa = 11.84VEE94 pKa = 4.07VYY96 pKa = 10.75GPEE99 pKa = 3.93AAA101 pKa = 4.91

Molecular weight: 10.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C5C1T8|A0A1C5C1T8_9ACTN Lipoprotein-anchoring transpeptidase ErfK/SrfK OS=Streptomyces sp. Ncost-T10-10d OX=1839774 GN=GA0115254_109126 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILASRR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.47GRR40 pKa = 11.84ANLSAA45 pKa = 4.66

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8519

0

8519

2687042

24

4425

315.4

33.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.258 ± 0.04

0.822 ± 0.008

5.944 ± 0.023

5.547 ± 0.029

2.746 ± 0.014

9.409 ± 0.03

2.343 ± 0.015

3.4 ± 0.016

2.292 ± 0.023

10.171 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.816 ± 0.01

1.878 ± 0.016

6.039 ± 0.024

2.859 ± 0.017

7.92 ± 0.035

5.331 ± 0.023

6.284 ± 0.025

8.315 ± 0.026

1.522 ± 0.011

2.105 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski