Amino acid dipepetide frequency for Gallivirus A (isolate Turkey/Hungary/M176/2011)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
9.3AlaAla: 9.3 ± 0.0
1.617AlaCys: 1.617 ± 0.0
3.639AlaAsp: 3.639 ± 0.0
1.617AlaGlu: 1.617 ± 0.0
4.852AlaPhe: 4.852 ± 0.0
5.661AlaGly: 5.661 ± 0.0
2.022AlaHis: 2.022 ± 0.0
3.235AlaIle: 3.235 ± 0.0
3.235AlaLys: 3.235 ± 0.0
6.066AlaLeu: 6.066 ± 0.0
1.617AlaMet: 1.617 ± 0.0
2.831AlaAsn: 2.831 ± 0.0
8.087AlaPro: 8.087 ± 0.0
2.831AlaGln: 2.831 ± 0.0
2.426AlaArg: 2.426 ± 0.0
9.3AlaSer: 9.3 ± 0.0
4.448AlaThr: 4.448 ± 0.0
6.066AlaVal: 6.066 ± 0.0
1.213AlaTrp: 1.213 ± 0.0
3.639AlaTyr: 3.639 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.809CysAsp: 0.809 ± 0.0
0.0CysGlu: 0.0 ± 0.0
2.426CysPhe: 2.426 ± 0.0
0.809CysGly: 0.809 ± 0.0
1.213CysHis: 1.213 ± 0.0
0.0CysIle: 0.0 ± 0.0
1.617CysLys: 1.617 ± 0.0
1.213CysLeu: 1.213 ± 0.0
0.404CysMet: 0.404 ± 0.0
1.213CysAsn: 1.213 ± 0.0
1.617CysPro: 1.617 ± 0.0
0.404CysGln: 0.404 ± 0.0
1.213CysArg: 1.213 ± 0.0
1.213CysSer: 1.213 ± 0.0
2.426CysThr: 2.426 ± 0.0
2.426CysVal: 2.426 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.404CysTyr: 0.404 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.044AspAla: 4.044 ± 0.0
1.617AspCys: 1.617 ± 0.0
3.235AspAsp: 3.235 ± 0.0
3.639AspGlu: 3.639 ± 0.0
3.639AspPhe: 3.639 ± 0.0
2.831AspGly: 2.831 ± 0.0
0.809AspHis: 0.809 ± 0.0
3.639AspIle: 3.639 ± 0.0
2.831AspLys: 2.831 ± 0.0
5.257AspLeu: 5.257 ± 0.0
0.809AspMet: 0.809 ± 0.0
0.809AspAsn: 0.809 ± 0.0
4.852AspPro: 4.852 ± 0.0
2.426AspGln: 2.426 ± 0.0
1.213AspArg: 1.213 ± 0.0
2.426AspSer: 2.426 ± 0.0
4.044AspThr: 4.044 ± 0.0
3.639AspVal: 3.639 ± 0.0
1.617AspTrp: 1.617 ± 0.0
1.213AspTyr: 1.213 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.044GluAla: 4.044 ± 0.0
1.213GluCys: 1.213 ± 0.0
2.426GluAsp: 2.426 ± 0.0
2.022GluGlu: 2.022 ± 0.0
1.213GluPhe: 1.213 ± 0.0
1.617GluGly: 1.617 ± 0.0
0.0GluHis: 0.0 ± 0.0
1.617GluIle: 1.617 ± 0.0
1.213GluLys: 1.213 ± 0.0
3.235GluLeu: 3.235 ± 0.0
0.404GluMet: 0.404 ± 0.0
2.022GluAsn: 2.022 ± 0.0
6.066GluPro: 6.066 ± 0.0
0.809GluGln: 0.809 ± 0.0
2.426GluArg: 2.426 ± 0.0
2.022GluSer: 2.022 ± 0.0
1.617GluThr: 1.617 ± 0.0
2.022GluVal: 2.022 ± 0.0
0.0GluTrp: 0.0 ± 0.0
1.617GluTyr: 1.617 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.022PheAla: 2.022 ± 0.0
0.0PheCys: 0.0 ± 0.0
3.235PheAsp: 3.235 ± 0.0
1.213PheGlu: 1.213 ± 0.0
1.213PhePhe: 1.213 ± 0.0
3.235PheGly: 3.235 ± 0.0
1.617PheHis: 1.617 ± 0.0
1.213PheIle: 1.213 ± 0.0
2.831PheLys: 2.831 ± 0.0
4.852PheLeu: 4.852 ± 0.0
0.0PheMet: 0.0 ± 0.0
1.213PheAsn: 1.213 ± 0.0
4.044PhePro: 4.044 ± 0.0
2.831PheGln: 2.831 ± 0.0
3.639PheArg: 3.639 ± 0.0
7.683PheSer: 7.683 ± 0.0
2.022PheThr: 2.022 ± 0.0
4.044PheVal: 4.044 ± 0.0
0.809PheTrp: 0.809 ± 0.0
1.617PheTyr: 1.617 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.852GlyAla: 4.852 ± 0.0
1.213GlyCys: 1.213 ± 0.0
5.661GlyAsp: 5.661 ± 0.0
2.831GlyGlu: 2.831 ± 0.0
3.235GlyPhe: 3.235 ± 0.0
2.426GlyGly: 2.426 ± 0.0
0.809GlyHis: 0.809 ± 0.0
4.448GlyIle: 4.448 ± 0.0
2.022GlyLys: 2.022 ± 0.0
4.852GlyLeu: 4.852 ± 0.0
1.617GlyMet: 1.617 ± 0.0
1.617GlyAsn: 1.617 ± 0.0
4.448GlyPro: 4.448 ± 0.0
1.617GlyGln: 1.617 ± 0.0
1.213GlyArg: 1.213 ± 0.0
5.661GlySer: 5.661 ± 0.0
2.831GlyThr: 2.831 ± 0.0
4.852GlyVal: 4.852 ± 0.0
0.809GlyTrp: 0.809 ± 0.0
4.448GlyTyr: 4.448 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.022HisAla: 2.022 ± 0.0
0.404HisCys: 0.404 ± 0.0
0.404HisAsp: 0.404 ± 0.0
0.0HisGlu: 0.0 ± 0.0
1.617HisPhe: 1.617 ± 0.0
0.809HisGly: 0.809 ± 0.0
0.809HisHis: 0.809 ± 0.0
0.809HisIle: 0.809 ± 0.0
0.404HisLys: 0.404 ± 0.0
1.617HisLeu: 1.617 ± 0.0
0.404HisMet: 0.404 ± 0.0
0.404HisAsn: 0.404 ± 0.0
2.426HisPro: 2.426 ± 0.0
0.809HisGln: 0.809 ± 0.0
0.0HisArg: 0.0 ± 0.0
1.213HisSer: 1.213 ± 0.0
1.213HisThr: 1.213 ± 0.0
2.831HisVal: 2.831 ± 0.0
0.809HisTrp: 0.809 ± 0.0
0.404HisTyr: 0.404 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.639IleAla: 3.639 ± 0.0
1.213IleCys: 1.213 ± 0.0
1.617IleAsp: 1.617 ± 0.0
2.831IleGlu: 2.831 ± 0.0
3.639IlePhe: 3.639 ± 0.0
4.448IleGly: 4.448 ± 0.0
0.0IleHis: 0.0 ± 0.0
3.235IleIle: 3.235 ± 0.0
2.022IleLys: 2.022 ± 0.0
4.044IleLeu: 4.044 ± 0.0
0.404IleMet: 0.404 ± 0.0
2.022IleAsn: 2.022 ± 0.0
4.044IlePro: 4.044 ± 0.0
2.426IleGln: 2.426 ± 0.0
3.639IleArg: 3.639 ± 0.0
4.044IleSer: 4.044 ± 0.0
3.639IleThr: 3.639 ± 0.0
5.257IleVal: 5.257 ± 0.0
0.404IleTrp: 0.404 ± 0.0
1.213IleTyr: 1.213 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.639LysAla: 3.639 ± 0.0
0.404LysCys: 0.404 ± 0.0
2.022LysAsp: 2.022 ± 0.0
1.617LysGlu: 1.617 ± 0.0
2.426LysPhe: 2.426 ± 0.0
1.213LysGly: 1.213 ± 0.0
1.617LysHis: 1.617 ± 0.0
5.257LysIle: 5.257 ± 0.0
0.809LysLys: 0.809 ± 0.0
3.639LysLeu: 3.639 ± 0.0
0.809LysMet: 0.809 ± 0.0
0.809LysAsn: 0.809 ± 0.0
4.448LysPro: 4.448 ± 0.0
1.213LysGln: 1.213 ± 0.0
1.213LysArg: 1.213 ± 0.0
2.426LysSer: 2.426 ± 0.0
2.831LysThr: 2.831 ± 0.0
1.617LysVal: 1.617 ± 0.0
0.404LysTrp: 0.404 ± 0.0
0.809LysTyr: 0.809 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.874LeuAla: 6.874 ± 0.0
1.213LeuCys: 1.213 ± 0.0
4.044LeuAsp: 4.044 ± 0.0
3.235LeuGlu: 3.235 ± 0.0
2.426LeuPhe: 2.426 ± 0.0
5.661LeuGly: 5.661 ± 0.0
1.213LeuHis: 1.213 ± 0.0
3.639LeuIle: 3.639 ± 0.0
4.448LeuLys: 4.448 ± 0.0
5.257LeuLeu: 5.257 ± 0.0
2.426LeuMet: 2.426 ± 0.0
3.235LeuAsn: 3.235 ± 0.0
7.279LeuPro: 7.279 ± 0.0
3.235LeuGln: 3.235 ± 0.0
2.022LeuArg: 2.022 ± 0.0
9.3LeuSer: 9.3 ± 0.0
6.874LeuThr: 6.874 ± 0.0
4.852LeuVal: 4.852 ± 0.0
0.404LeuTrp: 0.404 ± 0.0
3.639LeuTyr: 3.639 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
3.235MetAla: 3.235 ± 0.0
0.404MetCys: 0.404 ± 0.0
1.213MetAsp: 1.213 ± 0.0
0.0MetGlu: 0.0 ± 0.0
0.809MetPhe: 0.809 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
2.426MetIle: 2.426 ± 0.0
1.213MetLys: 1.213 ± 0.0
1.617MetLeu: 1.617 ± 0.0
0.0MetMet: 0.0 ± 0.0
1.213MetAsn: 1.213 ± 0.0
1.617MetPro: 1.617 ± 0.0
0.809MetGln: 0.809 ± 0.0
0.404MetArg: 0.404 ± 0.0
0.404MetSer: 0.404 ± 0.0
1.213MetThr: 1.213 ± 0.0
0.809MetVal: 0.809 ± 0.0
0.809MetTrp: 0.809 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.044AsnAla: 4.044 ± 0.0
1.213AsnCys: 1.213 ± 0.0
2.022AsnAsp: 2.022 ± 0.0
0.404AsnGlu: 0.404 ± 0.0
2.426AsnPhe: 2.426 ± 0.0
2.022AsnGly: 2.022 ± 0.0
0.809AsnHis: 0.809 ± 0.0
2.022AsnIle: 2.022 ± 0.0
1.213AsnLys: 1.213 ± 0.0
3.639AsnLeu: 3.639 ± 0.0
0.404AsnMet: 0.404 ± 0.0
2.426AsnAsn: 2.426 ± 0.0
4.044AsnPro: 4.044 ± 0.0
2.022AsnGln: 2.022 ± 0.0
1.617AsnArg: 1.617 ± 0.0
3.235AsnSer: 3.235 ± 0.0
3.235AsnThr: 3.235 ± 0.0
3.235AsnVal: 3.235 ± 0.0
1.213AsnTrp: 1.213 ± 0.0
1.213AsnTyr: 1.213 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
7.683ProAla: 7.683 ± 0.0
1.617ProCys: 1.617 ± 0.0
6.47ProAsp: 6.47 ± 0.0
3.639ProGlu: 3.639 ± 0.0
2.831ProPhe: 2.831 ± 0.0
5.257ProGly: 5.257 ± 0.0
0.404ProHis: 0.404 ± 0.0
3.235ProIle: 3.235 ± 0.0
1.617ProLys: 1.617 ± 0.0
7.683ProLeu: 7.683 ± 0.0
0.809ProMet: 0.809 ± 0.0
3.639ProAsn: 3.639 ± 0.0
11.727ProPro: 11.727 ± 0.0
6.47ProGln: 6.47 ± 0.0
8.087ProArg: 8.087 ± 0.0
7.683ProSer: 7.683 ± 0.0
6.066ProThr: 6.066 ± 0.0
2.426ProVal: 2.426 ± 0.0
1.213ProTrp: 1.213 ± 0.0
1.213ProTyr: 1.213 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
5.257GlnAla: 5.257 ± 0.0
1.617GlnCys: 1.617 ± 0.0
1.213GlnAsp: 1.213 ± 0.0
0.404GlnGlu: 0.404 ± 0.0
1.213GlnPhe: 1.213 ± 0.0
4.852GlnGly: 4.852 ± 0.0
0.0GlnHis: 0.0 ± 0.0
2.022GlnIle: 2.022 ± 0.0
1.213GlnLys: 1.213 ± 0.0
2.831GlnLeu: 2.831 ± 0.0
1.617GlnMet: 1.617 ± 0.0
2.426GlnAsn: 2.426 ± 0.0
2.426GlnPro: 2.426 ± 0.0
0.404GlnGln: 0.404 ± 0.0
0.404GlnArg: 0.404 ± 0.0
3.235GlnSer: 3.235 ± 0.0
2.426GlnThr: 2.426 ± 0.0
1.617GlnVal: 1.617 ± 0.0
1.213GlnTrp: 1.213 ± 0.0
0.809GlnTyr: 0.809 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.235ArgAla: 3.235 ± 0.0
0.404ArgCys: 0.404 ± 0.0
2.022ArgAsp: 2.022 ± 0.0
1.213ArgGlu: 1.213 ± 0.0
2.022ArgPhe: 2.022 ± 0.0
3.235ArgGly: 3.235 ± 0.0
0.809ArgHis: 0.809 ± 0.0
1.213ArgIle: 1.213 ± 0.0
1.617ArgLys: 1.617 ± 0.0
5.257ArgLeu: 5.257 ± 0.0
0.809ArgMet: 0.809 ± 0.0
4.448ArgAsn: 4.448 ± 0.0
3.639ArgPro: 3.639 ± 0.0
1.617ArgGln: 1.617 ± 0.0
2.831ArgArg: 2.831 ± 0.0
4.044ArgSer: 4.044 ± 0.0
2.022ArgThr: 2.022 ± 0.0
0.404ArgVal: 0.404 ± 0.0
0.809ArgTrp: 0.809 ± 0.0
1.617ArgTyr: 1.617 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.874SerAla: 6.874 ± 0.0
2.022SerCys: 2.022 ± 0.0
3.235SerAsp: 3.235 ± 0.0
3.235SerGlu: 3.235 ± 0.0
5.661SerPhe: 5.661 ± 0.0
7.683SerGly: 7.683 ± 0.0
1.213SerHis: 1.213 ± 0.0
6.47SerIle: 6.47 ± 0.0
4.852SerLys: 4.852 ± 0.0
7.279SerLeu: 7.279 ± 0.0
1.213SerMet: 1.213 ± 0.0
4.448SerAsn: 4.448 ± 0.0
6.066SerPro: 6.066 ± 0.0
3.235SerGln: 3.235 ± 0.0
3.639SerArg: 3.639 ± 0.0
8.492SerSer: 8.492 ± 0.0
6.066SerThr: 6.066 ± 0.0
4.448SerVal: 4.448 ± 0.0
1.617SerTrp: 1.617 ± 0.0
4.044SerTyr: 4.044 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.448ThrAla: 4.448 ± 0.0
0.809ThrCys: 0.809 ± 0.0
4.044ThrAsp: 4.044 ± 0.0
2.426ThrGlu: 2.426 ± 0.0
3.235ThrPhe: 3.235 ± 0.0
4.852ThrGly: 4.852 ± 0.0
1.617ThrHis: 1.617 ± 0.0
2.426ThrIle: 2.426 ± 0.0
3.639ThrLys: 3.639 ± 0.0
4.448ThrLeu: 4.448 ± 0.0
1.617ThrMet: 1.617 ± 0.0
3.235ThrAsn: 3.235 ± 0.0
7.279ThrPro: 7.279 ± 0.0
1.213ThrGln: 1.213 ± 0.0
2.831ThrArg: 2.831 ± 0.0
9.3ThrSer: 9.3 ± 0.0
2.831ThrThr: 2.831 ± 0.0
4.044ThrVal: 4.044 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
2.426ThrTyr: 2.426 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.661ValAla: 5.661 ± 0.0
1.213ValCys: 1.213 ± 0.0
5.257ValAsp: 5.257 ± 0.0
4.852ValGlu: 4.852 ± 0.0
2.426ValPhe: 2.426 ± 0.0
3.639ValGly: 3.639 ± 0.0
2.022ValHis: 2.022 ± 0.0
3.639ValIle: 3.639 ± 0.0
1.213ValLys: 1.213 ± 0.0
5.661ValLeu: 5.661 ± 0.0
1.617ValMet: 1.617 ± 0.0
1.213ValAsn: 1.213 ± 0.0
3.639ValPro: 3.639 ± 0.0
2.022ValGln: 2.022 ± 0.0
2.022ValArg: 2.022 ± 0.0
4.852ValSer: 4.852 ± 0.0
6.874ValThr: 6.874 ± 0.0
3.639ValVal: 3.639 ± 0.0
0.809ValTrp: 0.809 ± 0.0
0.404ValTyr: 0.404 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.617TrpAla: 1.617 ± 0.0
1.213TrpCys: 1.213 ± 0.0
0.404TrpAsp: 0.404 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.404TrpPhe: 0.404 ± 0.0
0.404TrpGly: 0.404 ± 0.0
0.404TrpHis: 0.404 ± 0.0
1.617TrpIle: 1.617 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.404TrpLeu: 0.404 ± 0.0
0.809TrpMet: 0.809 ± 0.0
0.809TrpAsn: 0.809 ± 0.0
0.809TrpPro: 0.809 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.809TrpArg: 0.809 ± 0.0
1.213TrpSer: 1.213 ± 0.0
1.213TrpThr: 1.213 ± 0.0
2.022TrpVal: 2.022 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.404TrpTyr: 0.404 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.213TyrAla: 1.213 ± 0.0
0.0TyrCys: 0.0 ± 0.0
1.617TyrAsp: 1.617 ± 0.0
2.426TyrGlu: 2.426 ± 0.0
1.617TyrPhe: 1.617 ± 0.0
1.213TyrGly: 1.213 ± 0.0
2.022TyrHis: 2.022 ± 0.0
1.617TyrIle: 1.617 ± 0.0
1.213TyrLys: 1.213 ± 0.0
2.426TyrLeu: 2.426 ± 0.0
0.0TyrMet: 0.0 ± 0.0
2.426TyrAsn: 2.426 ± 0.0
1.213TyrPro: 1.213 ± 0.0
0.809TyrGln: 0.809 ± 0.0
1.617TyrArg: 1.617 ± 0.0
4.044TyrSer: 4.044 ± 0.0
2.831TyrThr: 2.831 ± 0.0
2.426TyrVal: 2.426 ± 0.0
0.404TyrTrp: 0.404 ± 0.0
2.426TyrTyr: 2.426 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2474 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski