Malassezia pachydermatis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Malasseziomycetes; Malasseziales; Malasseziaceae; Malassezia

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4201 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M9VQT9|A0A0M9VQT9_9BASI DNA-directed RNA polymerase OS=Malassezia pachydermatis OX=77020 GN=Malapachy_3329 PE=3 SV=1
MM1 pKa = 7.3AVSYY5 pKa = 10.71YY6 pKa = 10.93DD7 pKa = 4.0EE8 pKa = 6.04IEE10 pKa = 4.46LEE12 pKa = 4.19DD13 pKa = 3.78MEE15 pKa = 5.34FDD17 pKa = 3.6EE18 pKa = 5.62ARR20 pKa = 11.84QAFTFPCPCGDD31 pKa = 3.24KK32 pKa = 11.23FEE34 pKa = 4.34ITLAQLKK41 pKa = 10.46DD42 pKa = 3.46EE43 pKa = 4.6EE44 pKa = 6.24DD45 pKa = 3.22IARR48 pKa = 11.84CPSCTLIIRR57 pKa = 11.84VIYY60 pKa = 10.39DD61 pKa = 3.84PLDD64 pKa = 4.18LDD66 pKa = 4.12LL67 pKa = 6.58

Molecular weight: 7.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M8MS53|A0A0M8MS53_9BASI Uncharacterized protein OS=Malassezia pachydermatis OX=77020 GN=Malapachy_1402 PE=4 SV=1
MM1 pKa = 7.6LLLTSLVRR9 pKa = 11.84GPRR12 pKa = 11.84AAMMRR17 pKa = 11.84AQPVSSLHH25 pKa = 5.46TSAIVAAAPRR35 pKa = 11.84PSAPRR40 pKa = 11.84TKK42 pKa = 10.43LKK44 pKa = 10.49SHH46 pKa = 6.43SAAKK50 pKa = 10.17KK51 pKa = 9.74RR52 pKa = 11.84FFPVMGSGRR61 pKa = 11.84GSPLSIKK68 pKa = 10.52FKK70 pKa = 9.58RR71 pKa = 11.84TSSNKK76 pKa = 7.1QHH78 pKa = 6.68LNSGMSRR85 pKa = 11.84VRR87 pKa = 11.84LNRR90 pKa = 11.84LSGTQVVSSGPVSRR104 pKa = 11.84MLRR107 pKa = 11.84RR108 pKa = 11.84LLGPRR113 pKa = 11.84LL114 pKa = 3.5

Molecular weight: 12.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4201

0

4201

2130625

51

4873

507.2

56.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.31 ± 0.049

1.125 ± 0.012

5.741 ± 0.026

6.074 ± 0.037

3.115 ± 0.025

5.828 ± 0.034

2.918 ± 0.017

3.866 ± 0.027

3.916 ± 0.038

9.539 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.802 ± 0.013

2.627 ± 0.025

6.368 ± 0.045

4.287 ± 0.021

6.607 ± 0.031

7.823 ± 0.041

6.33 ± 0.027

6.6 ± 0.026

1.48 ± 0.014

2.637 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski