Gammapapillomavirus 22

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2AM26|A0A2D2AM26_9PAPI E4 OS=Gammapapillomavirus 22 OX=1961679 GN=E4 PE=4 SV=1
MM1 pKa = 7.75IGPDD5 pKa = 3.46VKK7 pKa = 11.1SGDD10 pKa = 3.4IEE12 pKa = 5.61LDD14 pKa = 3.55LEE16 pKa = 4.64SLVLPEE22 pKa = 4.58NLLSNEE28 pKa = 4.07SLSPDD33 pKa = 3.38TEE35 pKa = 4.33GQAEE39 pKa = 4.3EE40 pKa = 5.04VEE42 pKa = 4.29QAPYY46 pKa = 9.96TVDD49 pKa = 3.65TSCNSCGARR58 pKa = 11.84VRR60 pKa = 11.84ICVIATRR67 pKa = 11.84IAILTLQEE75 pKa = 4.54LLTLEE80 pKa = 5.33LNLLCPPCSRR90 pKa = 11.84TVVRR94 pKa = 11.84HH95 pKa = 4.57GRR97 pKa = 11.84RR98 pKa = 3.23

Molecular weight: 10.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2AM35|A0A2D2AM35_9PAPI Replication protein E1 OS=Gammapapillomavirus 22 OX=1961679 GN=E1 PE=3 SV=1
MM1 pKa = 7.0NQADD5 pKa = 3.78LTDD8 pKa = 4.84RR9 pKa = 11.84YY10 pKa = 10.82DD11 pKa = 3.71ALQEE15 pKa = 4.08RR16 pKa = 11.84LMSLYY21 pKa = 10.3EE22 pKa = 3.95EE23 pKa = 4.38SSNTIEE29 pKa = 4.01AQIMLWEE36 pKa = 4.93TIRR39 pKa = 11.84KK40 pKa = 7.83EE41 pKa = 4.22QVLLYY46 pKa = 9.47YY47 pKa = 10.39GRR49 pKa = 11.84KK50 pKa = 9.15EE51 pKa = 4.0GYY53 pKa = 10.09KK54 pKa = 10.54NFGLQPIPNLAVSEE68 pKa = 4.21YY69 pKa = 9.39RR70 pKa = 11.84AKK72 pKa = 10.67EE73 pKa = 4.1AIQQVLLLKK82 pKa = 10.41SLQKK86 pKa = 10.5SAFGRR91 pKa = 11.84EE92 pKa = 3.9EE93 pKa = 3.64WTLTDD98 pKa = 3.54TSAEE102 pKa = 4.18LTHH105 pKa = 6.14TAPRR109 pKa = 11.84NTFKK113 pKa = 10.96KK114 pKa = 10.6GPFTVNVYY122 pKa = 10.44FDD124 pKa = 4.54HH125 pKa = 6.76NANNVFPYY133 pKa = 8.29TQWNWLYY140 pKa = 11.11VQDD143 pKa = 5.76DD144 pKa = 3.32NDD146 pKa = 3.35MWYY149 pKa = 7.88KK150 pKa = 10.13TPGLVDD156 pKa = 3.13INGLYY161 pKa = 10.6FEE163 pKa = 5.85DD164 pKa = 4.3NSGEE168 pKa = 4.08KK169 pKa = 10.57NYY171 pKa = 10.46FLLFATDD178 pKa = 3.25AEE180 pKa = 5.03TYY182 pKa = 7.43GTSGGWTVKK191 pKa = 10.52YY192 pKa = 10.51KK193 pKa = 11.08NEE195 pKa = 4.44TISTSTPVTSSQQRR209 pKa = 11.84SFSDD213 pKa = 3.39SFEE216 pKa = 4.36GSSKK220 pKa = 10.96GSVSSSGDD228 pKa = 3.33AVPLPKK234 pKa = 9.47TARR237 pKa = 11.84RR238 pKa = 11.84KK239 pKa = 7.23EE240 pKa = 4.32TEE242 pKa = 3.56EE243 pKa = 4.06GRR245 pKa = 11.84PHH247 pKa = 6.02STTPTTFTVRR257 pKa = 11.84RR258 pKa = 11.84RR259 pKa = 11.84RR260 pKa = 11.84RR261 pKa = 11.84RR262 pKa = 11.84IQQRR266 pKa = 11.84EE267 pKa = 3.87RR268 pKa = 11.84GTTTVSLRR276 pKa = 11.84SEE278 pKa = 3.8RR279 pKa = 11.84RR280 pKa = 11.84RR281 pKa = 11.84TQEE284 pKa = 3.52SQLGVPAGEE293 pKa = 4.48VGRR296 pKa = 11.84GHH298 pKa = 6.76HH299 pKa = 5.95LVPRR303 pKa = 11.84TGLKK307 pKa = 10.08RR308 pKa = 11.84LEE310 pKa = 4.1RR311 pKa = 11.84LEE313 pKa = 5.52AEE315 pKa = 4.5AGDD318 pKa = 3.93PPVILVKK325 pKa = 10.83GSANSLKK332 pKa = 9.97CWRR335 pKa = 11.84NRR337 pKa = 11.84SYY339 pKa = 10.94KK340 pKa = 11.01ANVPCVKK347 pKa = 9.8MSTVFRR353 pKa = 11.84WAEE356 pKa = 3.85CTEE359 pKa = 3.98NNIGANNRR367 pKa = 11.84MLIAFKK373 pKa = 10.79NRR375 pKa = 11.84AQRR378 pKa = 11.84EE379 pKa = 4.39VFLKK383 pKa = 9.47TVRR386 pKa = 11.84FPKK389 pKa = 10.34GVSYY393 pKa = 11.02CFGHH397 pKa = 7.59LDD399 pKa = 3.63SLL401 pKa = 4.38

Molecular weight: 45.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2436

98

601

348.0

39.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.337 ± 0.282

2.545 ± 0.824

6.117 ± 0.527

6.568 ± 0.374

4.475 ± 0.514

4.885 ± 0.505

1.642 ± 0.161

5.09 ± 0.604

5.952 ± 0.989

9.278 ± 1.095

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.519 ± 0.347

5.172 ± 0.328

6.486 ± 0.978

3.941 ± 0.388

5.624 ± 0.714

6.856 ± 0.921

7.266 ± 1.168

6.199 ± 0.957

1.273 ± 0.264

3.777 ± 0.656
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski