Porcine associated porprismacovirus 9

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A076VEP0|A0A076VEP0_9VIRU Cap protein OS=Porcine associated porprismacovirus 9 OX=2170125 PE=4 SV=1
MM1 pKa = 7.26ICIPRR6 pKa = 11.84KK7 pKa = 10.16AFLLCWSFLLLMVFVLLGILLGFFAQFRR35 pKa = 11.84KK36 pKa = 9.6FRR38 pKa = 11.84YY39 pKa = 9.49AGAKK43 pKa = 7.69VTFIPAATLPADD55 pKa = 4.06PLQVSYY61 pKa = 10.83EE62 pKa = 4.08AGEE65 pKa = 4.0PTIDD69 pKa = 5.06PRR71 pKa = 11.84DD72 pKa = 3.66LLNPILHH79 pKa = 6.5KK80 pKa = 10.66GIHH83 pKa = 6.41GDD85 pKa = 3.29ALGNLLEE92 pKa = 4.73EE93 pKa = 4.58YY94 pKa = 10.34KK95 pKa = 10.56QVLASGSSLEE105 pKa = 4.16LTKK108 pKa = 10.2TAAANYY114 pKa = 5.74MTLYY118 pKa = 8.82YY119 pKa = 10.33QCLTDD124 pKa = 4.1PSFKK128 pKa = 10.54KK129 pKa = 10.47SGLRR133 pKa = 11.84QGFVQNLYY141 pKa = 9.99PLVYY145 pKa = 10.58SLGTNRR151 pKa = 11.84QIMPSRR157 pKa = 11.84IFTAGASGLTVGDD170 pKa = 3.99PSLMEE175 pKa = 3.84TGKK178 pKa = 10.16IFSEE182 pKa = 4.09TDD184 pKa = 2.99GQFEE188 pKa = 4.8YY189 pKa = 11.17NDD191 pKa = 3.78EE192 pKa = 4.21TWGVSVRR199 pKa = 11.84RR200 pKa = 11.84SLGQAQQNLKK210 pKa = 10.96DD211 pKa = 4.51NAIEE215 pKa = 3.89WKK217 pKa = 9.37TYY219 pKa = 11.08DD220 pKa = 3.76EE221 pKa = 4.68FTTKK225 pKa = 9.01PTRR228 pKa = 11.84LGWLDD233 pKa = 3.31TLQIIRR239 pKa = 11.84DD240 pKa = 4.14NQSSMPDD247 pKa = 3.32SQVTGVNIEE256 pKa = 3.82LSIRR260 pKa = 11.84NPQDD264 pKa = 3.21PLASRR269 pKa = 11.84VTPCNFTTLPKK280 pKa = 10.03IPMYY284 pKa = 10.3MCFLPPAYY292 pKa = 8.44KK293 pKa = 9.61TEE295 pKa = 3.81MYY297 pKa = 10.14FRR299 pKa = 11.84IVIQHH304 pKa = 5.02YY305 pKa = 10.47FEE307 pKa = 4.84FKK309 pKa = 10.34EE310 pKa = 4.12FRR312 pKa = 11.84STFNQFGIGQVSTATDD328 pKa = 3.55VPYY331 pKa = 11.05DD332 pKa = 3.4WLNAIKK338 pKa = 10.12KK339 pKa = 9.68VSTASVEE346 pKa = 4.4SEE348 pKa = 4.08KK349 pKa = 11.27SLDD352 pKa = 3.46IAGGDD357 pKa = 4.0AEE359 pKa = 4.49LTTDD363 pKa = 3.97GVLL366 pKa = 3.65

Molecular weight: 40.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A076VEP0|A0A076VEP0_9VIRU Cap protein OS=Porcine associated porprismacovirus 9 OX=2170125 PE=4 SV=1
MM1 pKa = 8.06RR2 pKa = 11.84INAKK6 pKa = 8.49CTLVRR11 pKa = 11.84TIHH14 pKa = 6.67HH15 pKa = 7.33KK16 pKa = 9.8DD17 pKa = 2.81TLRR20 pKa = 11.84YY21 pKa = 10.37KK22 pKa = 10.12MVTNYY27 pKa = 9.76MITWSRR33 pKa = 11.84NDD35 pKa = 3.05TYY37 pKa = 11.53KK38 pKa = 10.67QFNQLMRR45 pKa = 11.84LIRR48 pKa = 11.84KK49 pKa = 9.19NDD51 pKa = 2.77IHH53 pKa = 7.31RR54 pKa = 11.84WIVGIEE60 pKa = 4.02TGTNGYY66 pKa = 9.6DD67 pKa = 2.99HH68 pKa = 6.68FQIRR72 pKa = 11.84MATRR76 pKa = 11.84WTFDD80 pKa = 2.72QMTEE84 pKa = 3.76IFHH87 pKa = 5.83GQAHH91 pKa = 6.37IEE93 pKa = 4.23EE94 pKa = 5.32CSDD97 pKa = 2.52TWEE100 pKa = 4.21YY101 pKa = 10.56EE102 pKa = 4.05RR103 pKa = 11.84KK104 pKa = 10.09SGIFFSSEE112 pKa = 3.21DD113 pKa = 3.37TAEE116 pKa = 3.67IRR118 pKa = 11.84RR119 pKa = 11.84VRR121 pKa = 11.84FGHH124 pKa = 6.45PNQAQEE130 pKa = 4.75HH131 pKa = 6.24IIEE134 pKa = 4.37TARR137 pKa = 11.84GQNDD141 pKa = 3.47RR142 pKa = 11.84QVDD145 pKa = 3.15VWYY148 pKa = 10.04DD149 pKa = 3.3PKK151 pKa = 11.36GNHH154 pKa = 5.59GKK156 pKa = 7.72TWLTVHH162 pKa = 5.87LWEE165 pKa = 5.31RR166 pKa = 11.84GQALVVPRR174 pKa = 11.84SSATPEE180 pKa = 3.89KK181 pKa = 10.46LSAFICSAYY190 pKa = 9.79KK191 pKa = 10.62GEE193 pKa = 4.17EE194 pKa = 4.13FIIIDD199 pKa = 3.62IPRR202 pKa = 11.84AGKK205 pKa = 9.94IPPSLYY211 pKa = 10.52EE212 pKa = 3.93VIEE215 pKa = 4.1EE216 pKa = 4.34VKK218 pKa = 10.79DD219 pKa = 3.6GLVFDD224 pKa = 4.47HH225 pKa = 7.49RR226 pKa = 11.84YY227 pKa = 7.42TGKK230 pKa = 8.17TRR232 pKa = 11.84NIRR235 pKa = 11.84GAKK238 pKa = 9.87VIIFTNTKK246 pKa = 10.09LDD248 pKa = 3.94EE249 pKa = 4.79KK250 pKa = 10.7KK251 pKa = 10.61LSYY254 pKa = 10.66DD255 pKa = 2.72RR256 pKa = 11.84WRR258 pKa = 11.84LHH260 pKa = 5.49GMEE263 pKa = 4.8KK264 pKa = 10.41GGEE267 pKa = 4.21GEE269 pKa = 4.12PLSS272 pKa = 4.04

Molecular weight: 31.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

638

272

366

319.0

36.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.643 ± 0.781

1.254 ± 0.096

5.329 ± 0.118

6.113 ± 1.02

5.172 ± 0.716

6.897 ± 0.056

2.351 ± 1.307

7.053 ± 1.123

5.643 ± 0.618

8.621 ± 2.203

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.508 ± 0.042

3.918 ± 0.08

4.545 ± 1.017

4.389 ± 0.452

5.956 ± 1.585

5.799 ± 0.88

7.837 ± 0.074

5.016 ± 0.15

2.038 ± 0.573

3.918 ± 0.153
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski