Tomato leaf curl Yunnan betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 4.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U8UW19|A0A2U8UW19_9VIRU Beta C1 OS=Tomato leaf curl Yunnan betasatellite OX=2203894 GN=C1 PE=4 SV=1
MM1 pKa = 7.23TIKK4 pKa = 10.81YY5 pKa = 9.56NNKK8 pKa = 9.52NGLEE12 pKa = 3.91FTIDD16 pKa = 3.3VRR18 pKa = 11.84LEE20 pKa = 3.76EE21 pKa = 4.22HH22 pKa = 6.24TSFIVQVKK30 pKa = 8.94IWSTRR35 pKa = 11.84APALAKK41 pKa = 9.99KK42 pKa = 10.38KK43 pKa = 10.61FMIPYY48 pKa = 7.9RR49 pKa = 11.84HH50 pKa = 6.24NGIVAPVDD58 pKa = 4.11FNSLEE63 pKa = 4.12EE64 pKa = 4.82GIKK67 pKa = 9.95HH68 pKa = 6.67CIKK71 pKa = 10.46IMYY74 pKa = 9.16KK75 pKa = 10.48NSTIWEE81 pKa = 4.63FKK83 pKa = 9.91QEE85 pKa = 4.01DD86 pKa = 4.48MIDD89 pKa = 4.05VIDD92 pKa = 3.88MLMMEE97 pKa = 5.04EE98 pKa = 4.73APVEE102 pKa = 4.17DD103 pKa = 4.16MDD105 pKa = 5.44VGDD108 pKa = 4.86EE109 pKa = 4.09YY110 pKa = 11.76DD111 pKa = 3.82VIIGSSVV118 pKa = 2.54

Molecular weight: 13.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U8UW19|A0A2U8UW19_9VIRU Beta C1 OS=Tomato leaf curl Yunnan betasatellite OX=2203894 GN=C1 PE=4 SV=1
MM1 pKa = 7.23TIKK4 pKa = 10.81YY5 pKa = 9.56NNKK8 pKa = 9.52NGLEE12 pKa = 3.91FTIDD16 pKa = 3.3VRR18 pKa = 11.84LEE20 pKa = 3.76EE21 pKa = 4.22HH22 pKa = 6.24TSFIVQVKK30 pKa = 8.94IWSTRR35 pKa = 11.84APALAKK41 pKa = 9.99KK42 pKa = 10.38KK43 pKa = 10.61FMIPYY48 pKa = 7.9RR49 pKa = 11.84HH50 pKa = 6.24NGIVAPVDD58 pKa = 4.11FNSLEE63 pKa = 4.12EE64 pKa = 4.82GIKK67 pKa = 9.95HH68 pKa = 6.67CIKK71 pKa = 10.46IMYY74 pKa = 9.16KK75 pKa = 10.48NSTIWEE81 pKa = 4.63FKK83 pKa = 9.91QEE85 pKa = 4.01DD86 pKa = 4.48MIDD89 pKa = 4.05VIDD92 pKa = 3.88MLMMEE97 pKa = 5.04EE98 pKa = 4.73APVEE102 pKa = 4.17DD103 pKa = 4.16MDD105 pKa = 5.44VGDD108 pKa = 4.86EE109 pKa = 4.09YY110 pKa = 11.76DD111 pKa = 3.82VIIGSSVV118 pKa = 2.54

Molecular weight: 13.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

118

118

118

118.0

13.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.237 ± 0.0

0.847 ± 0.0

7.627 ± 0.0

9.322 ± 0.0

4.237 ± 0.0

4.237 ± 0.0

2.542 ± 0.0

11.864 ± 0.0

8.475 ± 0.0

4.237 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

6.78 ± 0.0

5.085 ± 0.0

3.39 ± 0.0

1.695 ± 0.0

2.542 ± 0.0

5.085 ± 0.0

4.237 ± 0.0

8.475 ± 0.0

1.695 ± 0.0

3.39 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski