Halogeometricum sp. wsp3

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum; unclassified Halogeometricum

Average proteome isoelectric point is 7.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 845 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2W0FVK6|A0A2W0FVK6_9EURY Uncharacterized protein OS=Halogeometricum sp. wsp3 OX=2218585 GN=C8039_13940 PE=4 SV=1
MM1 pKa = 7.76PSDD4 pKa = 4.17DD5 pKa = 4.36APPLRR10 pKa = 11.84FEE12 pKa = 4.49KK13 pKa = 10.79VDD15 pKa = 3.16GRR17 pKa = 11.84LLVTVDD23 pKa = 3.16GTDD26 pKa = 3.35EE27 pKa = 4.19VTSGSDD33 pKa = 3.54GCCRR37 pKa = 11.84TAAVGDD43 pKa = 3.72PVLWGKK49 pKa = 9.41WDD51 pKa = 3.25IFCIVFSTYY60 pKa = 11.25DD61 pKa = 4.3LYY63 pKa = 11.23CQSYY67 pKa = 9.79SS68 pKa = 3.24

Molecular weight: 7.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2W0FQ42|A0A2W0FQ42_9EURY Uncharacterized protein OS=Halogeometricum sp. wsp3 OX=2218585 GN=C8039_18615 PE=4 SV=1
MM1 pKa = 7.27FAFNARR7 pKa = 11.84TSPSRR12 pKa = 11.84LPGRR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84RR19 pKa = 3.67

Molecular weight: 2.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

845

0

845

93895

19

440

111.1

12.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.235 ± 0.129

1.631 ± 0.043

6.44 ± 0.126

5.949 ± 0.131

2.575 ± 0.06

7.378 ± 0.111

2.309 ± 0.048

3.597 ± 0.087

1.913 ± 0.068

7.449 ± 0.094

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.004 ± 0.045

2.388 ± 0.06

5.54 ± 0.095

2.693 ± 0.062

11.541 ± 0.158

8.967 ± 0.131

7.513 ± 0.11

7.743 ± 0.103

1.159 ± 0.039

1.977 ± 0.053
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski