Amino acid dipepetide frequency for Avisivirus A (isolate Turkey/USA/USA-IN1/2010)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.083AlaAla: 5.083 ± 0.0
1.386AlaCys: 1.386 ± 0.0
4.621AlaAsp: 4.621 ± 0.0
0.924AlaGlu: 0.924 ± 0.0
3.235AlaPhe: 3.235 ± 0.0
6.007AlaGly: 6.007 ± 0.0
1.386AlaHis: 1.386 ± 0.0
3.235AlaIle: 3.235 ± 0.0
3.697AlaLys: 3.697 ± 0.0
6.007AlaLeu: 6.007 ± 0.0
4.159AlaMet: 4.159 ± 0.0
2.773AlaAsn: 2.773 ± 0.0
5.083AlaPro: 5.083 ± 0.0
0.462AlaGln: 0.462 ± 0.0
3.697AlaArg: 3.697 ± 0.0
4.621AlaSer: 4.621 ± 0.0
4.621AlaThr: 4.621 ± 0.0
4.159AlaVal: 4.159 ± 0.0
0.462AlaTrp: 0.462 ± 0.0
2.311AlaTyr: 2.311 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.924CysAla: 0.924 ± 0.0
0.462CysCys: 0.462 ± 0.0
2.773CysAsp: 2.773 ± 0.0
1.386CysGlu: 1.386 ± 0.0
0.924CysPhe: 0.924 ± 0.0
3.235CysGly: 3.235 ± 0.0
0.924CysHis: 0.924 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.924CysLys: 0.924 ± 0.0
0.924CysLeu: 0.924 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.386CysAsn: 1.386 ± 0.0
1.386CysPro: 1.386 ± 0.0
0.462CysGln: 0.462 ± 0.0
1.386CysArg: 1.386 ± 0.0
0.462CysSer: 0.462 ± 0.0
0.462CysThr: 0.462 ± 0.0
0.924CysVal: 0.924 ± 0.0
1.848CysTrp: 1.848 ± 0.0
1.386CysTyr: 1.386 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.773AspAla: 2.773 ± 0.0
0.462AspCys: 0.462 ± 0.0
2.773AspAsp: 2.773 ± 0.0
3.235AspGlu: 3.235 ± 0.0
3.235AspPhe: 3.235 ± 0.0
3.697AspGly: 3.697 ± 0.0
0.924AspHis: 0.924 ± 0.0
4.621AspIle: 4.621 ± 0.0
5.545AspLys: 5.545 ± 0.0
4.621AspLeu: 4.621 ± 0.0
0.462AspMet: 0.462 ± 0.0
1.386AspAsn: 1.386 ± 0.0
2.773AspPro: 2.773 ± 0.0
2.311AspGln: 2.311 ± 0.0
2.773AspArg: 2.773 ± 0.0
6.007AspSer: 6.007 ± 0.0
3.235AspThr: 3.235 ± 0.0
2.311AspVal: 2.311 ± 0.0
1.386AspTrp: 1.386 ± 0.0
3.235AspTyr: 3.235 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.697GluAla: 3.697 ± 0.0
0.0GluCys: 0.0 ± 0.0
2.773GluAsp: 2.773 ± 0.0
2.773GluGlu: 2.773 ± 0.0
1.386GluPhe: 1.386 ± 0.0
5.545GluGly: 5.545 ± 0.0
1.386GluHis: 1.386 ± 0.0
4.621GluIle: 4.621 ± 0.0
1.848GluLys: 1.848 ± 0.0
5.545GluLeu: 5.545 ± 0.0
0.462GluMet: 0.462 ± 0.0
1.848GluAsn: 1.848 ± 0.0
2.773GluPro: 2.773 ± 0.0
3.697GluGln: 3.697 ± 0.0
1.848GluArg: 1.848 ± 0.0
0.924GluSer: 0.924 ± 0.0
3.697GluThr: 3.697 ± 0.0
6.007GluVal: 6.007 ± 0.0
1.386GluTrp: 1.386 ± 0.0
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.311PheAla: 2.311 ± 0.0
0.924PheCys: 0.924 ± 0.0
4.621PheAsp: 4.621 ± 0.0
1.848PheGlu: 1.848 ± 0.0
3.697PhePhe: 3.697 ± 0.0
2.773PheGly: 2.773 ± 0.0
0.462PheHis: 0.462 ± 0.0
1.386PheIle: 1.386 ± 0.0
3.235PheLys: 3.235 ± 0.0
2.311PheLeu: 2.311 ± 0.0
0.924PheMet: 0.924 ± 0.0
1.848PheAsn: 1.848 ± 0.0
2.311PhePro: 2.311 ± 0.0
3.235PheGln: 3.235 ± 0.0
2.311PheArg: 2.311 ± 0.0
4.621PheSer: 4.621 ± 0.0
1.848PheThr: 1.848 ± 0.0
3.697PheVal: 3.697 ± 0.0
0.0PheTrp: 0.0 ± 0.0
1.386PheTyr: 1.386 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
6.007GlyAla: 6.007 ± 0.0
1.848GlyCys: 1.848 ± 0.0
4.159GlyAsp: 4.159 ± 0.0
4.621GlyGlu: 4.621 ± 0.0
4.159GlyPhe: 4.159 ± 0.0
2.773GlyGly: 2.773 ± 0.0
2.311GlyHis: 2.311 ± 0.0
2.773GlyIle: 2.773 ± 0.0
5.083GlyLys: 5.083 ± 0.0
2.773GlyLeu: 2.773 ± 0.0
1.386GlyMet: 1.386 ± 0.0
3.235GlyAsn: 3.235 ± 0.0
3.235GlyPro: 3.235 ± 0.0
2.773GlyGln: 2.773 ± 0.0
2.773GlyArg: 2.773 ± 0.0
6.47GlySer: 6.47 ± 0.0
6.932GlyThr: 6.932 ± 0.0
3.235GlyVal: 3.235 ± 0.0
1.386GlyTrp: 1.386 ± 0.0
1.386GlyTyr: 1.386 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.924HisAla: 0.924 ± 0.0
0.924HisCys: 0.924 ± 0.0
0.462HisAsp: 0.462 ± 0.0
0.462HisGlu: 0.462 ± 0.0
1.386HisPhe: 1.386 ± 0.0
2.773HisGly: 2.773 ± 0.0
0.0HisHis: 0.0 ± 0.0
0.462HisIle: 0.462 ± 0.0
1.386HisLys: 1.386 ± 0.0
1.848HisLeu: 1.848 ± 0.0
0.924HisMet: 0.924 ± 0.0
1.386HisAsn: 1.386 ± 0.0
1.848HisPro: 1.848 ± 0.0
1.386HisGln: 1.386 ± 0.0
0.462HisArg: 0.462 ± 0.0
2.773HisSer: 2.773 ± 0.0
1.386HisThr: 1.386 ± 0.0
1.848HisVal: 1.848 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.462HisTyr: 0.462 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
6.007IleAla: 6.007 ± 0.0
1.386IleCys: 1.386 ± 0.0
5.083IleAsp: 5.083 ± 0.0
3.697IleGlu: 3.697 ± 0.0
3.235IlePhe: 3.235 ± 0.0
0.924IleGly: 0.924 ± 0.0
1.848IleHis: 1.848 ± 0.0
1.848IleIle: 1.848 ± 0.0
2.311IleLys: 2.311 ± 0.0
4.159IleLeu: 4.159 ± 0.0
0.462IleMet: 0.462 ± 0.0
4.159IleAsn: 4.159 ± 0.0
1.848IlePro: 1.848 ± 0.0
1.386IleGln: 1.386 ± 0.0
2.773IleArg: 2.773 ± 0.0
4.621IleSer: 4.621 ± 0.0
3.697IleThr: 3.697 ± 0.0
2.773IleVal: 2.773 ± 0.0
0.462IleTrp: 0.462 ± 0.0
1.386IleTyr: 1.386 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.697LysAla: 3.697 ± 0.0
1.386LysCys: 1.386 ± 0.0
3.235LysAsp: 3.235 ± 0.0
3.697LysGlu: 3.697 ± 0.0
3.697LysPhe: 3.697 ± 0.0
2.773LysGly: 2.773 ± 0.0
2.311LysHis: 2.311 ± 0.0
4.159LysIle: 4.159 ± 0.0
2.311LysLys: 2.311 ± 0.0
4.621LysLeu: 4.621 ± 0.0
1.848LysMet: 1.848 ± 0.0
2.311LysAsn: 2.311 ± 0.0
0.924LysPro: 0.924 ± 0.0
1.386LysGln: 1.386 ± 0.0
1.848LysArg: 1.848 ± 0.0
3.697LysSer: 3.697 ± 0.0
3.235LysThr: 3.235 ± 0.0
3.697LysVal: 3.697 ± 0.0
0.924LysTrp: 0.924 ± 0.0
1.848LysTyr: 1.848 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
8.318LeuAla: 8.318 ± 0.0
1.386LeuCys: 1.386 ± 0.0
5.545LeuAsp: 5.545 ± 0.0
4.159LeuGlu: 4.159 ± 0.0
2.773LeuPhe: 2.773 ± 0.0
6.47LeuGly: 6.47 ± 0.0
1.848LeuHis: 1.848 ± 0.0
4.621LeuIle: 4.621 ± 0.0
5.545LeuLys: 5.545 ± 0.0
6.47LeuLeu: 6.47 ± 0.0
2.311LeuMet: 2.311 ± 0.0
5.083LeuAsn: 5.083 ± 0.0
4.159LeuPro: 4.159 ± 0.0
2.311LeuGln: 2.311 ± 0.0
2.311LeuArg: 2.311 ± 0.0
5.545LeuSer: 5.545 ± 0.0
3.235LeuThr: 3.235 ± 0.0
6.932LeuVal: 6.932 ± 0.0
0.462LeuTrp: 0.462 ± 0.0
4.159LeuTyr: 4.159 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
0.462MetAla: 0.462 ± 0.0
0.924MetCys: 0.924 ± 0.0
3.235MetAsp: 3.235 ± 0.0
1.386MetGlu: 1.386 ± 0.0
0.462MetPhe: 0.462 ± 0.0
1.386MetGly: 1.386 ± 0.0
0.462MetHis: 0.462 ± 0.0
1.848MetIle: 1.848 ± 0.0
1.386MetLys: 1.386 ± 0.0
1.386MetLeu: 1.386 ± 0.0
1.386MetMet: 1.386 ± 0.0
1.386MetAsn: 1.386 ± 0.0
1.386MetPro: 1.386 ± 0.0
0.924MetGln: 0.924 ± 0.0
0.462MetArg: 0.462 ± 0.0
0.462MetSer: 0.462 ± 0.0
1.848MetThr: 1.848 ± 0.0
3.235MetVal: 3.235 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.462MetTyr: 0.462 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.311AsnAla: 2.311 ± 0.0
0.924AsnCys: 0.924 ± 0.0
1.848AsnAsp: 1.848 ± 0.0
2.773AsnGlu: 2.773 ± 0.0
1.386AsnPhe: 1.386 ± 0.0
2.311AsnGly: 2.311 ± 0.0
0.0AsnHis: 0.0 ± 0.0
1.848AsnIle: 1.848 ± 0.0
2.773AsnLys: 2.773 ± 0.0
4.159AsnLeu: 4.159 ± 0.0
0.924AsnMet: 0.924 ± 0.0
0.924AsnAsn: 0.924 ± 0.0
4.159AsnPro: 4.159 ± 0.0
2.311AsnGln: 2.311 ± 0.0
4.159AsnArg: 4.159 ± 0.0
4.621AsnSer: 4.621 ± 0.0
2.311AsnThr: 2.311 ± 0.0
1.848AsnVal: 1.848 ± 0.0
1.848AsnTrp: 1.848 ± 0.0
2.311AsnTyr: 2.311 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.697ProAla: 3.697 ± 0.0
2.311ProCys: 2.311 ± 0.0
1.386ProAsp: 1.386 ± 0.0
3.235ProGlu: 3.235 ± 0.0
0.462ProPhe: 0.462 ± 0.0
5.083ProGly: 5.083 ± 0.0
1.386ProHis: 1.386 ± 0.0
3.235ProIle: 3.235 ± 0.0
1.848ProLys: 1.848 ± 0.0
3.697ProLeu: 3.697 ± 0.0
2.773ProMet: 2.773 ± 0.0
2.311ProAsn: 2.311 ± 0.0
3.235ProPro: 3.235 ± 0.0
1.386ProGln: 1.386 ± 0.0
3.697ProArg: 3.697 ± 0.0
3.697ProSer: 3.697 ± 0.0
2.311ProThr: 2.311 ± 0.0
1.386ProVal: 1.386 ± 0.0
0.924ProTrp: 0.924 ± 0.0
1.848ProTyr: 1.848 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.386GlnAla: 1.386 ± 0.0
1.386GlnCys: 1.386 ± 0.0
1.386GlnAsp: 1.386 ± 0.0
3.235GlnGlu: 3.235 ± 0.0
3.235GlnPhe: 3.235 ± 0.0
3.235GlnGly: 3.235 ± 0.0
0.462GlnHis: 0.462 ± 0.0
2.311GlnIle: 2.311 ± 0.0
0.0GlnLys: 0.0 ± 0.0
4.621GlnLeu: 4.621 ± 0.0
0.0GlnMet: 0.0 ± 0.0
1.848GlnAsn: 1.848 ± 0.0
1.386GlnPro: 1.386 ± 0.0
1.386GlnGln: 1.386 ± 0.0
0.924GlnArg: 0.924 ± 0.0
3.697GlnSer: 3.697 ± 0.0
3.697GlnThr: 3.697 ± 0.0
3.697GlnVal: 3.697 ± 0.0
0.924GlnTrp: 0.924 ± 0.0
0.924GlnTyr: 0.924 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.159ArgAla: 4.159 ± 0.0
1.386ArgCys: 1.386 ± 0.0
2.311ArgAsp: 2.311 ± 0.0
3.697ArgGlu: 3.697 ± 0.0
2.311ArgPhe: 2.311 ± 0.0
2.311ArgGly: 2.311 ± 0.0
1.386ArgHis: 1.386 ± 0.0
1.386ArgIle: 1.386 ± 0.0
1.848ArgLys: 1.848 ± 0.0
6.932ArgLeu: 6.932 ± 0.0
1.848ArgMet: 1.848 ± 0.0
1.386ArgAsn: 1.386 ± 0.0
2.311ArgPro: 2.311 ± 0.0
1.386ArgGln: 1.386 ± 0.0
6.007ArgArg: 6.007 ± 0.0
2.773ArgSer: 2.773 ± 0.0
2.773ArgThr: 2.773 ± 0.0
1.386ArgVal: 1.386 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
1.386ArgTyr: 1.386 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.159SerAla: 4.159 ± 0.0
1.848SerCys: 1.848 ± 0.0
4.159SerAsp: 4.159 ± 0.0
3.697SerGlu: 3.697 ± 0.0
4.159SerPhe: 4.159 ± 0.0
6.47SerGly: 6.47 ± 0.0
1.848SerHis: 1.848 ± 0.0
4.621SerIle: 4.621 ± 0.0
4.159SerLys: 4.159 ± 0.0
4.621SerLeu: 4.621 ± 0.0
1.848SerMet: 1.848 ± 0.0
3.235SerAsn: 3.235 ± 0.0
3.235SerPro: 3.235 ± 0.0
4.621SerGln: 4.621 ± 0.0
3.235SerArg: 3.235 ± 0.0
4.621SerSer: 4.621 ± 0.0
6.007SerThr: 6.007 ± 0.0
6.932SerVal: 6.932 ± 0.0
0.462SerTrp: 0.462 ± 0.0
2.311SerTyr: 2.311 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.159ThrAla: 4.159 ± 0.0
0.462ThrCys: 0.462 ± 0.0
1.386ThrAsp: 1.386 ± 0.0
2.311ThrGlu: 2.311 ± 0.0
1.386ThrPhe: 1.386 ± 0.0
3.697ThrGly: 3.697 ± 0.0
1.386ThrHis: 1.386 ± 0.0
3.697ThrIle: 3.697 ± 0.0
4.621ThrLys: 4.621 ± 0.0
8.318ThrLeu: 8.318 ± 0.0
0.462ThrMet: 0.462 ± 0.0
2.311ThrAsn: 2.311 ± 0.0
3.235ThrPro: 3.235 ± 0.0
3.235ThrGln: 3.235 ± 0.0
2.311ThrArg: 2.311 ± 0.0
6.47ThrSer: 6.47 ± 0.0
4.159ThrThr: 4.159 ± 0.0
6.47ThrVal: 6.47 ± 0.0
0.924ThrTrp: 0.924 ± 0.0
4.159ThrTyr: 4.159 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.083ValAla: 5.083 ± 0.0
0.924ValCys: 0.924 ± 0.0
3.697ValAsp: 3.697 ± 0.0
2.773ValGlu: 2.773 ± 0.0
1.386ValPhe: 1.386 ± 0.0
4.159ValGly: 4.159 ± 0.0
0.924ValHis: 0.924 ± 0.0
5.083ValIle: 5.083 ± 0.0
3.697ValLys: 3.697 ± 0.0
6.007ValLeu: 6.007 ± 0.0
2.311ValMet: 2.311 ± 0.0
4.621ValAsn: 4.621 ± 0.0
4.159ValPro: 4.159 ± 0.0
2.311ValGln: 2.311 ± 0.0
3.235ValArg: 3.235 ± 0.0
4.621ValSer: 4.621 ± 0.0
6.007ValThr: 6.007 ± 0.0
5.545ValVal: 5.545 ± 0.0
0.0ValTrp: 0.0 ± 0.0
3.235ValTyr: 3.235 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.924TrpAla: 0.924 ± 0.0
0.924TrpCys: 0.924 ± 0.0
0.924TrpAsp: 0.924 ± 0.0
0.924TrpGlu: 0.924 ± 0.0
1.386TrpPhe: 1.386 ± 0.0
0.462TrpGly: 0.462 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.848TrpIle: 1.848 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.462TrpLeu: 0.462 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.924TrpGln: 0.924 ± 0.0
1.848TrpArg: 1.848 ± 0.0
0.462TrpSer: 0.462 ± 0.0
1.848TrpThr: 1.848 ± 0.0
0.924TrpVal: 0.924 ± 0.0
0.462TrpTrp: 0.462 ± 0.0
0.462TrpTyr: 0.462 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.848TyrAla: 1.848 ± 0.0
0.924TyrCys: 0.924 ± 0.0
1.386TyrAsp: 1.386 ± 0.0
1.386TyrGlu: 1.386 ± 0.0
1.848TyrPhe: 1.848 ± 0.0
3.235TyrGly: 3.235 ± 0.0
1.848TyrHis: 1.848 ± 0.0
0.462TyrIle: 0.462 ± 0.0
1.386TyrLys: 1.386 ± 0.0
4.159TyrLeu: 4.159 ± 0.0
0.0TyrMet: 0.0 ± 0.0
2.311TyrAsn: 2.311 ± 0.0
0.462TyrPro: 0.462 ± 0.0
1.848TyrGln: 1.848 ± 0.0
0.924TyrArg: 0.924 ± 0.0
5.083TyrSer: 5.083 ± 0.0
1.848TyrThr: 1.848 ± 0.0
2.773TyrVal: 2.773 ± 0.0
0.924TyrTrp: 0.924 ± 0.0
0.924TyrTyr: 0.924 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2165 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski