Corynebacterium sp. 2184

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2114 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S0WHH3|A0A2S0WHH3_9CORY ATPase OS=Corynebacterium sp. 2184 OX=2079535 GN=C3E79_10790 PE=4 SV=1
MM1 pKa = 7.6ALGATMGVAACSNEE15 pKa = 4.1AEE17 pKa = 4.51TTPSEE22 pKa = 4.27TSTVASSAEE31 pKa = 3.78AAPAAEE37 pKa = 4.81LPSAADD43 pKa = 3.71LNGVLARR50 pKa = 11.84ATDD53 pKa = 3.56PAVPMEE59 pKa = 4.1EE60 pKa = 3.97RR61 pKa = 11.84VNTVQGGEE69 pKa = 4.12TAPEE73 pKa = 4.31LFDD76 pKa = 5.65VMAQSQQQSGANFHH90 pKa = 6.53VVDD93 pKa = 4.57PVLPGYY99 pKa = 9.69EE100 pKa = 4.25PNSVLATVSFNQPEE114 pKa = 4.06QGAQLADD121 pKa = 3.12NVEE124 pKa = 4.56FVFEE128 pKa = 3.9NGYY131 pKa = 9.5WKK133 pKa = 10.67LSKK136 pKa = 8.96TWACTLVTHH145 pKa = 7.22ALPPEE150 pKa = 4.31QVPPMCQSAAPAEE163 pKa = 4.74GGAPAPAPAEE173 pKa = 4.42GGAPAPAPALL183 pKa = 3.79

Molecular weight: 18.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S0WGZ5|A0A2S0WGZ5_9CORY Succinyl-CoA--3-ketoacid-CoA transferase OS=Corynebacterium sp. 2184 OX=2079535 GN=C3E79_02260 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84ARR15 pKa = 11.84KK16 pKa = 8.24HH17 pKa = 4.59GFRR20 pKa = 11.84ARR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIVSARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.72GRR40 pKa = 11.84ASLTAA45 pKa = 4.1

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2114

0

2114

689009

33

2976

325.9

35.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.03 ± 0.08

0.717 ± 0.015

5.863 ± 0.041

6.369 ± 0.06

3.224 ± 0.032

8.907 ± 0.049

2.049 ± 0.025

4.706 ± 0.028

2.697 ± 0.04

9.387 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.074 ± 0.023

2.497 ± 0.031

5.223 ± 0.042

2.903 ± 0.029

6.796 ± 0.058

5.611 ± 0.036

5.854 ± 0.044

8.487 ± 0.046

1.347 ± 0.023

2.258 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski