Capybara microvirus Cap3_SP_423

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8J5|A0A4P8W8J5_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_423 OX=2585449 PE=4 SV=1
MM1 pKa = 7.6LFNLKK6 pKa = 10.21YY7 pKa = 10.6YY8 pKa = 10.02NKK10 pKa = 10.0CEE12 pKa = 4.09NPEE15 pKa = 4.12FPPLLVPQKK24 pKa = 9.51TIVEE28 pKa = 4.22GSEE31 pKa = 3.61EE32 pKa = 4.59VIFLEE37 pKa = 5.25HH38 pKa = 6.5VPQNDD43 pKa = 4.12FPSEE47 pKa = 4.12MYY49 pKa = 10.66DD50 pKa = 3.66LQNLKK55 pKa = 10.53SAGISPTQFRR65 pKa = 11.84GGSVPSTSRR74 pKa = 11.84LSDD77 pKa = 3.19QSKK80 pKa = 11.05ADD82 pKa = 4.22AIVKK86 pKa = 10.36NIVNALNTKK95 pKa = 9.1EE96 pKa = 4.13NEE98 pKa = 3.98

Molecular weight: 11.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W627|A0A4P8W627_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_423 OX=2585449 PE=4 SV=1
MM1 pKa = 8.06RR2 pKa = 11.84LRR4 pKa = 11.84NRR6 pKa = 11.84ITIPTAFAYY15 pKa = 10.09QSQKK19 pKa = 10.29RR20 pKa = 11.84MEE22 pKa = 4.13YY23 pKa = 9.82TIRR26 pKa = 11.84AYY28 pKa = 10.65YY29 pKa = 9.75QFEE32 pKa = 4.08EE33 pKa = 4.59TKK35 pKa = 10.9LKK37 pKa = 10.77GGQQFFYY44 pKa = 10.55TLTYY48 pKa = 10.9NDD50 pKa = 3.69DD51 pKa = 3.92HH52 pKa = 7.63LPTFLGRR59 pKa = 11.84NCHH62 pKa = 6.96DD63 pKa = 4.04YY64 pKa = 11.75NDD66 pKa = 3.44IRR68 pKa = 11.84YY69 pKa = 7.86LTVGAFAKK77 pKa = 10.56KK78 pKa = 10.2LLRR81 pKa = 11.84HH82 pKa = 6.08YY83 pKa = 9.27NLSMKK88 pKa = 10.64YY89 pKa = 9.21MISSEE94 pKa = 4.06CGEE97 pKa = 4.44GKK99 pKa = 10.4GKK101 pKa = 10.25RR102 pKa = 11.84GYY104 pKa = 9.46GQNPHH109 pKa = 5.02YY110 pKa = 10.6HH111 pKa = 6.85IIFDD115 pKa = 4.7LRR117 pKa = 11.84PLVPGASICPIEE129 pKa = 4.34FRR131 pKa = 11.84SLLRR135 pKa = 11.84EE136 pKa = 3.68YY137 pKa = 9.56WQGVDD142 pKa = 4.49EE143 pKa = 5.77DD144 pKa = 4.52PLAPGSKK151 pKa = 8.33PQQYY155 pKa = 10.33KK156 pKa = 10.53FGIVQEE162 pKa = 4.35GQNLGQIDD170 pKa = 3.8NAYY173 pKa = 9.55NASAYY178 pKa = 8.76VSKK181 pKa = 11.09YY182 pKa = 9.68LVKK185 pKa = 10.22TIDD188 pKa = 3.2QRR190 pKa = 11.84KK191 pKa = 7.22EE192 pKa = 3.47ARR194 pKa = 11.84EE195 pKa = 3.91VLRR198 pKa = 11.84EE199 pKa = 4.11LYY201 pKa = 10.41LQVVKK206 pKa = 10.88SFEE209 pKa = 3.88RR210 pKa = 11.84VKK212 pKa = 10.81YY213 pKa = 10.98YY214 pKa = 11.03KK215 pKa = 10.6DD216 pKa = 3.42FLDD219 pKa = 3.77NTFDD223 pKa = 3.48EE224 pKa = 4.89YY225 pKa = 11.59DD226 pKa = 3.58FRR228 pKa = 11.84LHH230 pKa = 7.48RR231 pKa = 11.84YY232 pKa = 6.61YY233 pKa = 10.67QIYY236 pKa = 8.65TEE238 pKa = 4.51TNWCNSPNIPHH249 pKa = 6.72YY250 pKa = 10.77DD251 pKa = 3.17AVPRR255 pKa = 11.84DD256 pKa = 3.99DD257 pKa = 5.03EE258 pKa = 6.27DD259 pKa = 3.89FLEE262 pKa = 4.39WLCLHH267 pKa = 6.45HH268 pKa = 6.46CWNRR272 pKa = 11.84FSEE275 pKa = 4.31WFASDD280 pKa = 2.85INEE283 pKa = 4.36EE284 pKa = 3.88YY285 pKa = 10.43RR286 pKa = 11.84KK287 pKa = 9.98QKK289 pKa = 10.24NEE291 pKa = 3.33YY292 pKa = 8.77RR293 pKa = 11.84NRR295 pKa = 11.84YY296 pKa = 7.52APKK299 pKa = 9.67VRR301 pKa = 11.84ISNGFGDD308 pKa = 3.89YY309 pKa = 11.19ALNFVDD315 pKa = 5.06EE316 pKa = 4.43NNKK319 pKa = 9.02VPLMTFKK326 pKa = 10.66GHH328 pKa = 6.09KK329 pKa = 8.64LKK331 pKa = 10.89KK332 pKa = 9.67IGSHH336 pKa = 7.0LYY338 pKa = 10.0RR339 pKa = 11.84KK340 pKa = 9.75LYY342 pKa = 9.64KK343 pKa = 9.97DD344 pKa = 3.38WYY346 pKa = 9.34VDD348 pKa = 4.3PITKK352 pKa = 8.47TVRR355 pKa = 11.84YY356 pKa = 8.69KK357 pKa = 11.12DD358 pKa = 3.51KK359 pKa = 11.1DD360 pKa = 3.43SAIIGKK366 pKa = 8.49IQTLDD371 pKa = 3.4DD372 pKa = 4.62VILHH376 pKa = 5.86KK377 pKa = 9.51TNCVKK382 pKa = 10.91AKK384 pKa = 9.22LQKK387 pKa = 10.2SSRR390 pKa = 11.84PEE392 pKa = 3.68LASLSNMYY400 pKa = 10.64SIFDD404 pKa = 3.4TVYY407 pKa = 8.55RR408 pKa = 11.84DD409 pKa = 3.49RR410 pKa = 11.84IIRR413 pKa = 11.84LTDD416 pKa = 2.84EE417 pKa = 4.22RR418 pKa = 11.84FYY420 pKa = 11.43DD421 pKa = 4.13DD422 pKa = 4.23SCITPEE428 pKa = 4.07VYY430 pKa = 9.97QDD432 pKa = 3.48YY433 pKa = 10.7LYY435 pKa = 11.39NCLIDD440 pKa = 3.86AQNFNHH446 pKa = 5.97FRR448 pKa = 11.84DD449 pKa = 3.87VTPKK453 pKa = 10.42SDD455 pKa = 3.6YY456 pKa = 10.5FCQKK460 pKa = 10.11FVDD463 pKa = 4.76GVNPEE468 pKa = 4.16HH469 pKa = 6.64MPFFAPFRR477 pKa = 11.84KK478 pKa = 10.23DD479 pKa = 4.03FEE481 pKa = 6.02DD482 pKa = 3.11ITNILDD488 pKa = 3.75ISCAQQDD495 pKa = 3.76QQKK498 pKa = 9.04YY499 pKa = 7.09VAWEE503 pKa = 4.02KK504 pKa = 10.28QKK506 pKa = 11.01KK507 pKa = 9.77VYY509 pKa = 10.46LFQKK513 pKa = 8.35SQNYY517 pKa = 9.54AIQPQVLQQMRR528 pKa = 11.84KK529 pKa = 7.13SS530 pKa = 3.42

Molecular weight: 63.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1572

98

582

393.0

45.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.043 ± 0.913

1.209 ± 0.389

6.552 ± 0.783

6.17 ± 1.08

5.344 ± 1.396

5.598 ± 0.878

1.654 ± 0.403

5.725 ± 0.607

6.997 ± 0.87

8.079 ± 0.5

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.163 ± 0.289

6.87 ± 0.67

3.69 ± 0.522

5.471 ± 0.757

5.089 ± 0.516

6.743 ± 0.762

4.517 ± 0.465

5.216 ± 0.205

0.954 ± 0.146

5.916 ± 1.101
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski