Acromyrmex echinatior (Panamanian leafcutter ant) (Acromyrmex octospinosus echinatior)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae;

Average proteome isoelectric point is 7.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13962 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F4X4J0|F4X4J0_ACREC Uncharacterized protein OS=Acromyrmex echinatior OX=103372 GN=G5I_13253 PE=4 SV=1
MM1 pKa = 7.14VVLSSLLPPQEE12 pKa = 4.66GIRR15 pKa = 11.84HH16 pKa = 5.66EE17 pKa = 4.43EE18 pKa = 4.06PNTTVYY24 pKa = 10.78INDD27 pKa = 3.7RR28 pKa = 11.84EE29 pKa = 4.35VGKK32 pKa = 8.84GTFYY36 pKa = 10.18VTEE39 pKa = 4.5SVLSWVDD46 pKa = 2.99NDD48 pKa = 3.93TQQGFSLEE56 pKa = 4.16YY57 pKa = 10.02PHH59 pKa = 7.27ISLHH63 pKa = 6.32AISRR67 pKa = 11.84DD68 pKa = 3.7EE69 pKa = 3.97QVHH72 pKa = 5.94PRR74 pKa = 11.84QCLYY78 pKa = 10.91IMIDD82 pKa = 3.5AKK84 pKa = 11.21VDD86 pKa = 3.92LPDD89 pKa = 3.71MPLPLASEE97 pKa = 4.22NGSEE101 pKa = 4.77NEE103 pKa = 5.14DD104 pKa = 4.18DD105 pKa = 4.55NADD108 pKa = 3.68PPITEE113 pKa = 4.18MQFAPDD119 pKa = 3.43NTNNLDD125 pKa = 4.13LMFQAMSACQALHH138 pKa = 7.46PDD140 pKa = 3.96PQDD143 pKa = 3.33SFSDD147 pKa = 3.31EE148 pKa = 5.17DD149 pKa = 3.49IYY151 pKa = 11.58EE152 pKa = 4.45DD153 pKa = 4.89AEE155 pKa = 3.9EE156 pKa = 4.97DD157 pKa = 3.89YY158 pKa = 11.19EE159 pKa = 4.62GEE161 pKa = 3.98YY162 pKa = 10.9DD163 pKa = 3.93EE164 pKa = 5.7EE165 pKa = 4.62VGAGDD170 pKa = 4.78APCILPTEE178 pKa = 4.36QMGTTHH184 pKa = 7.33TGTEE188 pKa = 4.09AEE190 pKa = 3.99EE191 pKa = 4.31AMDD194 pKa = 3.59IEE196 pKa = 4.89AGQFEE201 pKa = 4.86DD202 pKa = 5.63AEE204 pKa = 4.32EE205 pKa = 4.4DD206 pKa = 3.54PP207 pKa = 5.23

Molecular weight: 23.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F4WZX2|F4WZX2_ACREC 39S ribosomal protein L32 mitochondrial OS=Acromyrmex echinatior OX=103372 GN=G5I_11444 PE=4 SV=1
MM1 pKa = 7.44SAHH4 pKa = 6.1KK5 pKa = 9.54TFIIKK10 pKa = 10.29RR11 pKa = 11.84KK12 pKa = 8.65LAKK15 pKa = 9.89KK16 pKa = 10.19LKK18 pKa = 8.64QNRR21 pKa = 11.84PIPQWVRR28 pKa = 11.84MRR30 pKa = 11.84TGNTIRR36 pKa = 11.84YY37 pKa = 5.79NAKK40 pKa = 8.47RR41 pKa = 11.84RR42 pKa = 11.84HH43 pKa = 4.1WRR45 pKa = 11.84RR46 pKa = 11.84TKK48 pKa = 10.89LKK50 pKa = 10.55LL51 pKa = 3.39

Molecular weight: 6.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13962

0

13962

6253196

40

17174

447.9

50.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.097 ± 0.021

2.005 ± 0.028

5.417 ± 0.016

6.755 ± 0.033

3.576 ± 0.018

5.328 ± 0.026

2.525 ± 0.011

6.069 ± 0.022

6.423 ± 0.032

8.962 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.335 ± 0.012

5.139 ± 0.021

4.897 ± 0.03

4.18 ± 0.024

5.956 ± 0.025

8.144 ± 0.029

6.025 ± 0.022

5.906 ± 0.015

1.099 ± 0.008

3.135 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski