Bos taurus papillomavirus 12

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Xipapillomavirus; Xipapillomavirus 2

Average proteome isoelectric point is 5.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G1CR70|G1CR70_9PAPI Replication protein E1 OS=Bos taurus papillomavirus 12 OX=1070324 GN=E1 PE=3 SV=1
MM1 pKa = 7.82RR2 pKa = 11.84GSQPAISDD10 pKa = 3.1ISEE13 pKa = 4.0EE14 pKa = 4.12LQEE17 pKa = 4.37LVCPVNLEE25 pKa = 4.07CDD27 pKa = 3.41EE28 pKa = 4.31EE29 pKa = 4.15LAPEE33 pKa = 4.3NDD35 pKa = 3.58DD36 pKa = 4.04PYY38 pKa = 11.56AVAVACHH45 pKa = 6.0KK46 pKa = 10.58CGNQVAFCVYY56 pKa = 10.47APRR59 pKa = 11.84EE60 pKa = 4.38GIRR63 pKa = 11.84QFQQLLLDD71 pKa = 5.2CLDD74 pKa = 4.43FCCPACSLNLLQRR87 pKa = 11.84NGLL90 pKa = 3.69

Molecular weight: 9.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G1CR72|G1CR72_9PAPI E4 protein OS=Bos taurus papillomavirus 12 OX=1070324 GN=E4 PE=4 SV=1
MM1 pKa = 8.04DD2 pKa = 5.48PLAARR7 pKa = 11.84FDD9 pKa = 3.95ALQEE13 pKa = 3.89EE14 pKa = 5.03LMQIYY19 pKa = 10.06EE20 pKa = 4.29RR21 pKa = 11.84GEE23 pKa = 4.18STLDD27 pKa = 3.01AQIRR31 pKa = 11.84HH32 pKa = 5.8WEE34 pKa = 4.42LIRR37 pKa = 11.84HH38 pKa = 5.18EE39 pKa = 4.08QATYY43 pKa = 9.83FVARR47 pKa = 11.84RR48 pKa = 11.84QGITRR53 pKa = 11.84LGLYY57 pKa = 7.23PVPSASVSEE66 pKa = 4.28ARR68 pKa = 11.84AKK70 pKa = 10.02QAIEE74 pKa = 3.75MHH76 pKa = 6.88LLLQSLKK83 pKa = 10.15KK84 pKa = 10.13SAYY87 pKa = 9.86ADD89 pKa = 3.68EE90 pKa = 4.63RR91 pKa = 11.84WTLVEE96 pKa = 3.87TSFEE100 pKa = 4.41HH101 pKa = 6.78FNSPPARR108 pKa = 11.84TLKK111 pKa = 10.55KK112 pKa = 10.49GPTQVTVIYY121 pKa = 10.62DD122 pKa = 3.89NNPEE126 pKa = 3.86NAMTYY131 pKa = 7.21TLWKK135 pKa = 9.07YY136 pKa = 11.23VYY138 pKa = 10.63VLDD141 pKa = 5.73PNDD144 pKa = 3.32VWHH147 pKa = 7.05KK148 pKa = 10.66LPSDD152 pKa = 3.0VDD154 pKa = 3.82YY155 pKa = 11.77YY156 pKa = 11.33GIYY159 pKa = 8.9YY160 pKa = 9.65TDD162 pKa = 4.66LDD164 pKa = 3.86QQRR167 pKa = 11.84VYY169 pKa = 10.64YY170 pKa = 10.77VSFGTDD176 pKa = 2.73AEE178 pKa = 4.53QYY180 pKa = 8.91TGSGQWTVHH189 pKa = 5.92FANKK193 pKa = 8.69TFSAPVTSSAGGHH206 pKa = 5.9SGLEE210 pKa = 4.15EE211 pKa = 3.95EE212 pKa = 4.73QAQGPRR218 pKa = 11.84QLAARR223 pKa = 11.84RR224 pKa = 11.84QATYY228 pKa = 9.74RR229 pKa = 11.84GRR231 pKa = 11.84RR232 pKa = 11.84SRR234 pKa = 11.84RR235 pKa = 11.84SRR237 pKa = 11.84TPQTPPRR244 pKa = 11.84SRR246 pKa = 11.84SRR248 pKa = 11.84SEE250 pKa = 3.63SRR252 pKa = 11.84SRR254 pKa = 11.84SASSSSDD261 pKa = 2.85TDD263 pKa = 2.95HH264 pKa = 7.78RR265 pKa = 11.84SRR267 pKa = 11.84SRR269 pKa = 11.84QRR271 pKa = 11.84NGGRR275 pKa = 11.84GFRR278 pKa = 11.84RR279 pKa = 11.84GDD281 pKa = 3.24STGEE285 pKa = 3.87HH286 pKa = 6.89PEE288 pKa = 3.96SEE290 pKa = 4.6EE291 pKa = 3.53EE292 pKa = 4.22SGRR295 pKa = 11.84HH296 pKa = 4.87SPGPPGSLGRR306 pKa = 11.84RR307 pKa = 11.84TAEE310 pKa = 3.69TSGASGRR317 pKa = 11.84RR318 pKa = 11.84RR319 pKa = 11.84TPRR322 pKa = 11.84VVQLLKK328 pKa = 10.83DD329 pKa = 3.52AADD332 pKa = 3.95PPVLLLRR339 pKa = 11.84GPANTLKK346 pKa = 10.7GFRR349 pKa = 11.84RR350 pKa = 11.84KK351 pKa = 9.81ARR353 pKa = 11.84LKK355 pKa = 8.39YY356 pKa = 10.0SEE358 pKa = 5.27YY359 pKa = 9.32YY360 pKa = 10.72SCMSTAFSWVSGTCTEE376 pKa = 5.04RR377 pKa = 11.84LGTCQRR383 pKa = 11.84MLVAFNSDD391 pKa = 3.23SQRR394 pKa = 11.84TRR396 pKa = 11.84FLCNVHH402 pKa = 6.47IPRR405 pKa = 11.84SVTFVKK411 pKa = 10.85GSFDD415 pKa = 3.5ALL417 pKa = 3.54

Molecular weight: 47.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2409

41

596

301.1

33.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.853 ± 0.684

1.868 ± 0.546

6.476 ± 0.649

6.185 ± 0.357

4.608 ± 0.491

6.434 ± 0.689

1.91 ± 0.184

4.4 ± 0.735

4.649 ± 0.969

9.174 ± 1.352

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.743 ± 0.225

4.525 ± 0.666

6.517 ± 0.8

4.774 ± 0.291

6.434 ± 1.078

7.057 ± 0.815

6.517 ± 0.787

6.31 ± 0.484

1.411 ± 0.341

3.155 ± 0.34
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski