Temperate fruit decay-associated virus

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses

Average proteome isoelectric point is 8.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K0TNV7|A0A0K0TNV7_9VIRU Viral protein RNase Z OS=Temperate fruit decay-associated virus OX=1628899 PE=4 SV=1
MM1 pKa = 7.7APNLISRR8 pKa = 11.84NFVFTINNPTFNPDD22 pKa = 3.33DD23 pKa = 4.54LFVGEE28 pKa = 3.99PPEE31 pKa = 4.08WVRR34 pKa = 11.84CAIWQLEE41 pKa = 4.19EE42 pKa = 4.87GEE44 pKa = 4.68QGTQHH49 pKa = 5.04IQGYY53 pKa = 9.82IEE55 pKa = 3.8FTKK58 pKa = 10.57AIRR61 pKa = 11.84ASRR64 pKa = 11.84FCQIINGDD72 pKa = 3.79NPHH75 pKa = 7.09LEE77 pKa = 4.04VRR79 pKa = 11.84RR80 pKa = 11.84GSRR83 pKa = 11.84DD84 pKa = 2.97QAYY87 pKa = 9.56NYY89 pKa = 9.71CSKK92 pKa = 11.18EE93 pKa = 3.95EE94 pKa = 4.08TRR96 pKa = 11.84VSGPYY101 pKa = 9.62TYY103 pKa = 10.99GSWKK107 pKa = 9.26LCKK110 pKa = 9.94GRR112 pKa = 11.84RR113 pKa = 11.84TDD115 pKa = 3.95IEE117 pKa = 4.12AATTAILEE125 pKa = 3.98QDD127 pKa = 3.45ADD129 pKa = 4.43DD130 pKa = 6.27DD131 pKa = 4.4EE132 pKa = 5.68LLHH135 pKa = 5.77NHH137 pKa = 6.24SGVMAKK143 pKa = 10.12YY144 pKa = 8.86PKK146 pKa = 9.56FVKK149 pKa = 10.43FLRR152 pKa = 11.84EE153 pKa = 3.66HH154 pKa = 6.46KK155 pKa = 9.81RR156 pKa = 11.84RR157 pKa = 11.84KK158 pKa = 9.13INSEE162 pKa = 3.4IVFPHH167 pKa = 6.7EE168 pKa = 3.56LHH170 pKa = 6.66PWQISLISYY179 pKa = 10.53LEE181 pKa = 4.54DD182 pKa = 3.31EE183 pKa = 5.23PIPRR187 pKa = 11.84KK188 pKa = 9.86IKK190 pKa = 9.68WFVDD194 pKa = 3.25EE195 pKa = 5.18RR196 pKa = 11.84GGSGKK201 pKa = 8.53STFAKK206 pKa = 10.2HH207 pKa = 5.01MARR210 pKa = 11.84HH211 pKa = 5.31GAFYY215 pKa = 10.47TRR217 pKa = 11.84GGKK220 pKa = 7.86TPDD223 pKa = 2.83VAFAFRR229 pKa = 11.84EE230 pKa = 4.15HH231 pKa = 6.85LSSNPHH237 pKa = 4.22STIVIFDD244 pKa = 3.6FTRR247 pKa = 11.84SGKK250 pKa = 10.44DD251 pKa = 3.16YY252 pKa = 11.2VNYY255 pKa = 10.49DD256 pKa = 3.05ILEE259 pKa = 4.18QIKK262 pKa = 10.81DD263 pKa = 3.96GIVVSNKK270 pKa = 9.81YY271 pKa = 10.16EE272 pKa = 3.99STTIISPVQHH282 pKa = 6.69CIVFANWEE290 pKa = 4.21PNKK293 pKa = 10.98GEE295 pKa = 4.24LVPGG299 pKa = 4.04

Molecular weight: 34.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0H3VFP7|A0A0H3VFP7_9VIRU RNA-binding protein OS=Temperate fruit decay-associated virus OX=1628899 PE=4 SV=1
MM1 pKa = 8.02AIRR4 pKa = 11.84YY5 pKa = 5.88PLKK8 pKa = 10.05RR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84PLKK14 pKa = 8.74RR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84IFRR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84KK24 pKa = 9.33KK25 pKa = 10.12RR26 pKa = 11.84YY27 pKa = 6.82STARR31 pKa = 11.84RR32 pKa = 11.84KK33 pKa = 10.23YY34 pKa = 9.08EE35 pKa = 3.74APQYY39 pKa = 10.3IRR41 pKa = 11.84LYY43 pKa = 10.84SNPLVINSGGSMVMQSVFPMGTGQTSRR70 pKa = 11.84LSNRR74 pKa = 11.84TAVTGIMVRR83 pKa = 11.84VASAVMANLVTATLQEE99 pKa = 4.24LVIHH103 pKa = 6.19NWFILDD109 pKa = 4.0KK110 pKa = 10.95APTGNDD116 pKa = 2.69IPGPSIIFDD125 pKa = 3.74GVSPWNYY132 pKa = 10.11SVEE135 pKa = 4.02HH136 pKa = 6.43DD137 pKa = 3.35RR138 pKa = 11.84KK139 pKa = 10.72KK140 pKa = 10.72RR141 pKa = 11.84FSVLKK146 pKa = 9.98KK147 pKa = 8.56WHH149 pKa = 6.43TKK151 pKa = 8.51LTTGGTWTANSSCQVLPRR169 pKa = 11.84SVTGKK174 pKa = 10.23SFMWRR179 pKa = 11.84PKK181 pKa = 10.6KK182 pKa = 10.22PVITYY187 pKa = 7.65WKK189 pKa = 10.32NNATANYY196 pKa = 10.28SDD198 pKa = 4.15VEE200 pKa = 4.71SNALLWVMIVSSSIPQQTAANCTCNIYY227 pKa = 10.84YY228 pKa = 10.77DD229 pKa = 3.34NTVYY233 pKa = 10.12FKK235 pKa = 11.11CLL237 pKa = 3.15

Molecular weight: 27.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

848

77

299

169.6

19.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.835 ± 0.561

1.415 ± 0.156

3.302 ± 0.852

4.245 ± 1.382

4.245 ± 0.692

5.542 ± 0.498

2.712 ± 0.563

8.255 ± 0.763

5.896 ± 0.416

9.788 ± 2.567

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.476 ± 0.674

5.307 ± 0.564

5.189 ± 0.409

3.656 ± 0.363

7.193 ± 0.791

8.726 ± 1.388

4.953 ± 1.027

6.132 ± 0.535

2.123 ± 0.277

4.009 ± 0.239
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski