Peniophora sp. CBMAI 1063

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Russulales; Peniophoraceae; Peniophora; unclassified Peniophora

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17685 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5E3XFB8|A0A5E3XFB8_9AGAM JmjC domain-containing protein OS=Peniophora sp. CBMAI 1063 OX=718367 GN=PNH_LOCUS12441 PE=4 SV=1
MM1 pKa = 6.32MAGWASAWNVTVLPLGDD18 pKa = 4.21SITYY22 pKa = 9.39GWEE25 pKa = 3.88SSDD28 pKa = 3.19GNGYY32 pKa = 9.98RR33 pKa = 11.84EE34 pKa = 4.17GLLEE38 pKa = 5.25LIEE41 pKa = 4.47ASGNAVDD48 pKa = 4.86YY49 pKa = 10.76IGSIQAGSMADD60 pKa = 3.26NWNDD64 pKa = 3.6GYY66 pKa = 10.55IGCTIEE72 pKa = 4.67QIATNGVSALQMVPKK87 pKa = 10.5VVLLLAGTNDD97 pKa = 2.78INYY100 pKa = 9.78QEE102 pKa = 5.11DD103 pKa = 4.01LANAPARR110 pKa = 11.84LDD112 pKa = 3.6SLIDD116 pKa = 4.06EE117 pKa = 4.79IFSYY121 pKa = 10.37TPQATVLVSDD131 pKa = 4.49IPLIVDD137 pKa = 3.56DD138 pKa = 4.37TLEE141 pKa = 4.44PLVKK145 pKa = 9.71TYY147 pKa = 11.02NAGVLDD153 pKa = 4.2LVNGRR158 pKa = 11.84IADD161 pKa = 3.94GQKK164 pKa = 10.22LVHH167 pKa = 6.24VSLDD171 pKa = 3.36ALTSSEE177 pKa = 4.4MADD180 pKa = 3.22EE181 pKa = 4.22LHH183 pKa = 7.03PNDD186 pKa = 4.3EE187 pKa = 4.86GYY189 pKa = 10.52QVLAKK194 pKa = 10.18AWYY197 pKa = 8.78TGVQTAAAKK206 pKa = 10.16GWIASS211 pKa = 3.68

Molecular weight: 22.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5E3WZ03|A0A5E3WZ03_9AGAM Uncharacterized protein OS=Peniophora sp. CBMAI 1063 OX=718367 GN=PNH_LOCUS6806 PE=4 SV=1
MM1 pKa = 7.39ATPAMSPTATQPSQGRR17 pKa = 11.84PSTSPRR23 pKa = 11.84LGKK26 pKa = 10.4SGLISSSKK34 pKa = 9.83RR35 pKa = 11.84AAPSTMARR43 pKa = 11.84SRR45 pKa = 11.84TTPSTKK51 pKa = 10.16SDD53 pKa = 3.17TKK55 pKa = 7.97TTRR58 pKa = 11.84LPKK61 pKa = 10.22PSANTAKK68 pKa = 10.01TSPRR72 pKa = 11.84VKK74 pKa = 9.84TSSVPSKK81 pKa = 10.69VQAATAASKK90 pKa = 11.04AKK92 pKa = 9.21TAAPLVKK99 pKa = 9.79TKK101 pKa = 10.47AAPISSASKK110 pKa = 9.3VPAAPRR116 pKa = 11.84HH117 pKa = 5.43SSIQASPKK125 pKa = 9.66LAAKK129 pKa = 10.31ARR131 pKa = 11.84TASVASPKK139 pKa = 10.46AKK141 pKa = 9.29PAPRR145 pKa = 11.84ISKK148 pKa = 10.34LPSSPNKK155 pKa = 9.58AQAPARR161 pKa = 11.84AVSAATRR168 pKa = 11.84SAPVTRR174 pKa = 11.84SVGKK178 pKa = 8.59STGSSGAKK186 pKa = 8.86PAPSVVKK193 pKa = 10.37ARR195 pKa = 11.84PASTFSATSKK205 pKa = 7.38TTVRR209 pKa = 11.84RR210 pKa = 11.84ASVLSRR216 pKa = 11.84ARR218 pKa = 11.84TEE220 pKa = 3.83PATAASGIIASPPATPTAPTKK241 pKa = 9.07GTRR244 pKa = 11.84SGRR247 pKa = 11.84SVGWAA252 pKa = 3.08

Molecular weight: 25.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

17197

488

17685

8329052

16

5014

471.0

51.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.984 ± 0.021

1.212 ± 0.007

5.834 ± 0.011

5.877 ± 0.016

3.481 ± 0.012

6.6 ± 0.017

2.6 ± 0.008

4.342 ± 0.013

3.8 ± 0.016

9.431 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.034 ± 0.007

3.023 ± 0.009

6.7 ± 0.025

3.48 ± 0.01

6.795 ± 0.016

8.259 ± 0.022

5.945 ± 0.012

6.449 ± 0.013

1.488 ± 0.007

2.608 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski