Amino acid dipepetide frequency for Maize necrotic streak virus (MNeSV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.79AlaAla: 4.79 ± 1.215
0.0AlaCys: 0.0 ± 0.0
2.395AlaAsp: 2.395 ± 0.726
1.796AlaGlu: 1.796 ± 1.156
2.395AlaPhe: 2.395 ± 0.947
2.994AlaGly: 2.994 ± 1.087
1.198AlaHis: 1.198 ± 0.733
7.186AlaIle: 7.186 ± 1.799
10.18AlaLys: 10.18 ± 2.816
7.186AlaLeu: 7.186 ± 0.885
4.192AlaMet: 4.192 ± 1.511
1.796AlaAsn: 1.796 ± 0.738
2.395AlaPro: 2.395 ± 1.346
3.593AlaGln: 3.593 ± 0.965
2.994AlaArg: 2.994 ± 0.517
4.79AlaSer: 4.79 ± 1.092
8.383AlaThr: 8.383 ± 2.215
7.186AlaVal: 7.186 ± 0.941
1.198AlaTrp: 1.198 ± 0.724
1.198AlaTyr: 1.198 ± 0.724
0.0AlaXaa: 0.0 ± 0.0
Cys
1.198CysAla: 1.198 ± 0.531
0.0CysCys: 0.0 ± 0.0
1.198CysAsp: 1.198 ± 0.531
0.599CysGlu: 0.599 ± 0.367
1.198CysPhe: 1.198 ± 0.531
1.796CysGly: 1.796 ± 0.747
0.0CysHis: 0.0 ± 0.0
1.198CysIle: 1.198 ± 0.622
0.0CysLys: 0.0 ± 0.0
1.796CysLeu: 1.796 ± 0.674
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.796CysPro: 1.796 ± 1.56
0.599CysGln: 0.599 ± 0.367
1.796CysArg: 1.796 ± 0.674
1.198CysSer: 1.198 ± 0.733
0.599CysThr: 0.599 ± 0.872
2.994CysVal: 2.994 ± 1.267
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.988AspAla: 5.988 ± 2.35
3.593AspCys: 3.593 ± 1.045
0.599AspAsp: 0.599 ± 0.367
3.593AspGlu: 3.593 ± 1.349
2.395AspPhe: 2.395 ± 0.708
2.395AspGly: 2.395 ± 0.947
0.0AspHis: 0.0 ± 0.0
2.994AspIle: 2.994 ± 0.856
2.994AspLys: 2.994 ± 0.618
2.395AspLeu: 2.395 ± 0.708
2.994AspMet: 2.994 ± 0.982
0.0AspAsn: 0.0 ± 0.0
1.198AspPro: 1.198 ± 0.724
1.796AspGln: 1.796 ± 0.747
4.192AspArg: 4.192 ± 1.191
2.994AspSer: 2.994 ± 1.204
2.994AspThr: 2.994 ± 0.773
2.994AspVal: 2.994 ± 0.783
1.796AspTrp: 1.796 ± 0.851
1.198AspTyr: 1.198 ± 0.531
0.0AspXaa: 0.0 ± 0.0
Glu
5.389GluAla: 5.389 ± 1.391
1.198GluCys: 1.198 ± 0.531
1.796GluAsp: 1.796 ± 1.156
4.192GluGlu: 4.192 ± 1.428
2.395GluPhe: 2.395 ± 0.726
4.192GluGly: 4.192 ± 0.886
0.599GluHis: 0.599 ± 0.367
2.994GluIle: 2.994 ± 1.159
1.796GluLys: 1.796 ± 1.1
5.389GluLeu: 5.389 ± 2.341
1.198GluMet: 1.198 ± 0.627
1.198GluAsn: 1.198 ± 0.531
1.198GluPro: 1.198 ± 0.622
1.198GluGln: 1.198 ± 0.581
5.988GluArg: 5.988 ± 0.852
7.784GluSer: 7.784 ± 2.164
1.796GluThr: 1.796 ± 0.747
4.79GluVal: 4.79 ± 1.323
0.599GluTrp: 0.599 ± 0.872
1.796GluTyr: 1.796 ± 0.738
0.0GluXaa: 0.0 ± 0.0
Phe
4.79PheAla: 4.79 ± 1.451
1.198PheCys: 1.198 ± 0.733
1.796PheAsp: 1.796 ± 0.674
1.198PheGlu: 1.198 ± 0.581
0.599PhePhe: 0.599 ± 0.367
1.796PheGly: 1.796 ± 0.724
0.599PheHis: 0.599 ± 0.367
0.0PheIle: 0.0 ± 0.0
2.395PheLys: 2.395 ± 0.726
3.593PheLeu: 3.593 ± 0.795
0.599PheMet: 0.599 ± 0.367
0.0PheAsn: 0.0 ± 0.0
0.0PhePro: 0.0 ± 0.0
1.796PheGln: 1.796 ± 0.747
2.994PheArg: 2.994 ± 1.33
2.395PheSer: 2.395 ± 1.672
0.599PheThr: 0.599 ± 0.367
2.994PheVal: 2.994 ± 0.783
1.198PheTrp: 1.198 ± 0.724
1.198PheTyr: 1.198 ± 0.733
0.0PheXaa: 0.0 ± 0.0
Gly
4.79GlyAla: 4.79 ± 2.488
2.395GlyCys: 2.395 ± 1.448
5.988GlyAsp: 5.988 ± 1.546
1.796GlyGlu: 1.796 ± 0.674
4.192GlyPhe: 4.192 ± 0.829
6.587GlyGly: 6.587 ± 1.95
0.0GlyHis: 0.0 ± 0.0
4.79GlyIle: 4.79 ± 1.893
4.79GlyLys: 4.79 ± 0.909
5.988GlyLeu: 5.988 ± 1.017
1.796GlyMet: 1.796 ± 0.77
1.796GlyAsn: 1.796 ± 0.664
2.994GlyPro: 2.994 ± 1.087
1.198GlyGln: 1.198 ± 1.073
4.79GlyArg: 4.79 ± 1.093
5.988GlySer: 5.988 ± 2.548
5.389GlyThr: 5.389 ± 1.353
6.587GlyVal: 6.587 ± 1.803
0.599GlyTrp: 0.599 ± 0.367
4.192GlyTyr: 4.192 ± 0.797
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
1.796HisCys: 1.796 ± 1.1
0.599HisAsp: 0.599 ± 0.872
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
0.599HisGly: 0.599 ± 0.367
0.599HisHis: 0.599 ± 0.872
0.599HisIle: 0.599 ± 0.367
1.198HisLys: 1.198 ± 0.733
1.796HisLeu: 1.796 ± 0.738
0.0HisMet: 0.0 ± 0.0
0.599HisAsn: 0.599 ± 0.367
0.599HisPro: 0.599 ± 0.367
0.599HisGln: 0.599 ± 0.367
1.198HisArg: 1.198 ± 0.724
0.599HisSer: 0.599 ± 0.631
0.0HisThr: 0.0 ± 0.0
0.599HisVal: 0.599 ± 0.367
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.994IleAla: 2.994 ± 0.95
0.0IleCys: 0.0 ± 0.0
2.395IleAsp: 2.395 ± 0.607
2.395IleGlu: 2.395 ± 0.947
0.599IlePhe: 0.599 ± 0.367
5.988IleGly: 5.988 ± 1.318
0.0IleHis: 0.0 ± 0.0
0.599IleIle: 0.599 ± 0.67
3.593IleLys: 3.593 ± 1.045
1.796IleLeu: 1.796 ± 0.627
1.796IleMet: 1.796 ± 0.627
2.395IleAsn: 2.395 ± 1.033
3.593IlePro: 3.593 ± 1.158
1.796IleGln: 1.796 ± 0.747
4.79IleArg: 4.79 ± 1.736
2.994IleSer: 2.994 ± 1.204
4.79IleThr: 4.79 ± 2.234
3.593IleVal: 3.593 ± 0.98
0.599IleTrp: 0.599 ± 0.67
2.994IleTyr: 2.994 ± 1.157
0.0IleXaa: 0.0 ± 0.0
Lys
7.186LysAla: 7.186 ± 0.749
0.0LysCys: 0.0 ± 0.0
1.796LysAsp: 1.796 ± 0.674
5.389LysGlu: 5.389 ± 2.482
0.0LysPhe: 0.0 ± 0.0
5.988LysGly: 5.988 ± 1.913
0.599LysHis: 0.599 ± 0.367
1.796LysIle: 1.796 ± 0.674
1.198LysLys: 1.198 ± 1.261
6.587LysLeu: 6.587 ± 2.225
2.395LysMet: 2.395 ± 0.971
2.994LysAsn: 2.994 ± 0.783
5.389LysPro: 5.389 ± 1.532
0.0LysGln: 0.0 ± 0.0
3.593LysArg: 3.593 ± 1.384
1.796LysSer: 1.796 ± 0.627
1.198LysThr: 1.198 ± 0.836
5.389LysVal: 5.389 ± 0.896
2.395LysTrp: 2.395 ± 0.947
2.994LysTyr: 2.994 ± 1.82
0.599LysXaa: 0.599 ± 0.367
Leu
2.994LeuAla: 2.994 ± 0.865
2.395LeuCys: 2.395 ± 0.607
5.389LeuAsp: 5.389 ± 1.158
4.79LeuGlu: 4.79 ± 0.952
3.593LeuPhe: 3.593 ± 1.447
6.587LeuGly: 6.587 ± 2.202
1.796LeuHis: 1.796 ± 0.954
2.994LeuIle: 2.994 ± 1.157
2.994LeuLys: 2.994 ± 1.157
8.982LeuLeu: 8.982 ± 1.499
3.593LeuMet: 3.593 ± 1.061
3.593LeuAsn: 3.593 ± 2.473
8.383LeuPro: 8.383 ± 2.278
1.796LeuGln: 1.796 ± 0.747
3.593LeuArg: 3.593 ± 1.876
6.587LeuSer: 6.587 ± 1.414
4.79LeuThr: 4.79 ± 0.863
8.383LeuVal: 8.383 ± 1.302
1.796LeuTrp: 1.796 ± 0.627
1.796LeuTyr: 1.796 ± 1.156
0.0LeuXaa: 0.0 ± 0.0
Met
4.79MetAla: 4.79 ± 1.013
0.599MetCys: 0.599 ± 0.367
2.395MetAsp: 2.395 ± 0.708
1.796MetGlu: 1.796 ± 0.851
1.198MetPhe: 1.198 ± 0.531
1.796MetGly: 1.796 ± 0.627
0.0MetHis: 0.0 ± 0.0
1.198MetIle: 1.198 ± 0.581
1.198MetLys: 1.198 ± 0.733
0.0MetLeu: 0.0 ± 0.0
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
0.0MetPro: 0.0 ± 0.0
0.0MetGln: 0.0 ± 0.0
4.192MetArg: 4.192 ± 1.23
2.395MetSer: 2.395 ± 0.673
1.796MetThr: 1.796 ± 2.011
2.395MetVal: 2.395 ± 1.033
0.0MetTrp: 0.0 ± 0.0
1.796MetTyr: 1.796 ± 2.011
0.0MetXaa: 0.0 ± 0.0
Asn
1.198AsnAla: 1.198 ± 0.733
0.599AsnCys: 0.599 ± 0.367
3.593AsnAsp: 3.593 ± 1.701
1.796AsnGlu: 1.796 ± 0.738
0.0AsnPhe: 0.0 ± 0.0
1.198AsnGly: 1.198 ± 0.622
0.599AsnHis: 0.599 ± 0.367
1.796AsnIle: 1.796 ± 0.674
5.389AsnLys: 5.389 ± 1.537
1.198AsnLeu: 1.198 ± 0.733
0.0AsnMet: 0.0 ± 0.0
1.796AsnAsn: 1.796 ± 1.1
0.0AsnPro: 0.0 ± 0.0
0.599AsnGln: 0.599 ± 0.367
2.994AsnArg: 2.994 ± 0.95
1.796AsnSer: 1.796 ± 1.32
2.994AsnThr: 2.994 ± 1.087
2.994AsnVal: 2.994 ± 1.053
0.0AsnTrp: 0.0 ± 0.0
1.796AsnTyr: 1.796 ± 0.664
0.0AsnXaa: 0.0 ± 0.0
Pro
4.192ProAla: 4.192 ± 1.656
0.0ProCys: 0.0 ± 0.0
2.994ProAsp: 2.994 ± 1.455
3.593ProGlu: 3.593 ± 0.506
1.198ProPhe: 1.198 ± 0.724
1.796ProGly: 1.796 ± 1.24
0.0ProHis: 0.0 ± 0.0
3.593ProIle: 3.593 ± 1.763
1.796ProLys: 1.796 ± 1.258
4.192ProLeu: 4.192 ± 1.608
0.0ProMet: 0.0 ± 0.0
1.198ProAsn: 1.198 ± 0.581
1.198ProPro: 1.198 ± 0.581
1.198ProGln: 1.198 ± 0.581
5.389ProArg: 5.389 ± 2.023
2.994ProSer: 2.994 ± 0.856
2.395ProThr: 2.395 ± 1.346
4.79ProVal: 4.79 ± 1.72
1.198ProTrp: 1.198 ± 1.261
0.599ProTyr: 0.599 ± 0.631
0.0ProXaa: 0.0 ± 0.0
Gln
2.395GlnAla: 2.395 ± 1.466
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
2.395GlnGlu: 2.395 ± 0.708
1.796GlnPhe: 1.796 ± 0.747
2.395GlnGly: 2.395 ± 1.603
1.796GlnHis: 1.796 ± 1.1
1.796GlnIle: 1.796 ± 1.378
0.0GlnLys: 0.0 ± 0.0
2.395GlnLeu: 2.395 ± 0.726
1.198GlnMet: 1.198 ± 1.341
0.0GlnAsn: 0.0 ± 0.0
1.198GlnPro: 1.198 ± 0.733
1.796GlnGln: 1.796 ± 0.848
2.395GlnArg: 2.395 ± 0.726
2.395GlnSer: 2.395 ± 1.011
1.198GlnThr: 1.198 ± 1.073
4.192GlnVal: 4.192 ± 1.21
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.395ArgAla: 2.395 ± 2.422
0.0ArgCys: 0.0 ± 0.0
5.389ArgAsp: 5.389 ± 1.687
3.593ArgGlu: 3.593 ± 0.916
4.192ArgPhe: 4.192 ± 1.294
3.593ArgGly: 3.593 ± 1.349
1.198ArgHis: 1.198 ± 0.581
5.988ArgIle: 5.988 ± 0.802
4.192ArgLys: 4.192 ± 0.886
9.581ArgLeu: 9.581 ± 1.052
2.994ArgMet: 2.994 ± 0.517
4.192ArgAsn: 4.192 ± 1.23
1.796ArgPro: 1.796 ± 0.724
0.0ArgGln: 0.0 ± 0.0
3.593ArgArg: 3.593 ± 1.233
4.79ArgSer: 4.79 ± 0.743
3.593ArgThr: 3.593 ± 1.608
6.587ArgVal: 6.587 ± 1.371
2.994ArgTrp: 2.994 ± 0.517
4.79ArgTyr: 4.79 ± 1.451
0.0ArgXaa: 0.0 ± 0.0
Ser
4.192SerAla: 4.192 ± 1.667
1.198SerCys: 1.198 ± 0.724
2.395SerAsp: 2.395 ± 1.639
1.796SerGlu: 1.796 ± 1.951
1.796SerPhe: 1.796 ± 0.954
7.186SerGly: 7.186 ± 1.748
0.599SerHis: 0.599 ± 0.367
3.593SerIle: 3.593 ± 1.384
5.389SerLys: 5.389 ± 1.221
6.587SerLeu: 6.587 ± 1.414
1.796SerMet: 1.796 ± 0.848
4.192SerAsn: 4.192 ± 0.886
2.994SerPro: 2.994 ± 1.318
2.395SerGln: 2.395 ± 0.947
8.982SerArg: 8.982 ± 2.376
1.198SerSer: 1.198 ± 0.622
2.994SerThr: 2.994 ± 1.159
5.988SerVal: 5.988 ± 2.053
1.198SerTrp: 1.198 ± 0.724
2.395SerTyr: 2.395 ± 0.673
0.0SerXaa: 0.0 ± 0.0
Thr
5.988ThrAla: 5.988 ± 1.676
0.599ThrCys: 0.599 ± 0.367
2.395ThrAsp: 2.395 ± 0.978
6.587ThrGlu: 6.587 ± 1.687
1.796ThrPhe: 1.796 ± 0.77
6.587ThrGly: 6.587 ± 2.008
0.0ThrHis: 0.0 ± 0.0
0.0ThrIle: 0.0 ± 0.0
2.395ThrLys: 2.395 ± 1.999
5.988ThrLeu: 5.988 ± 1.346
1.198ThrMet: 1.198 ± 0.581
1.198ThrAsn: 1.198 ± 0.581
4.192ThrPro: 4.192 ± 0.902
0.599ThrGln: 0.599 ± 0.67
4.192ThrArg: 4.192 ± 1.23
2.395ThrSer: 2.395 ± 1.448
3.593ThrThr: 3.593 ± 1.721
3.593ThrVal: 3.593 ± 1.866
0.0ThrTrp: 0.0 ± 0.0
2.994ThrTyr: 2.994 ± 0.773
0.0ThrXaa: 0.0 ± 0.0
Val
8.982ValAla: 8.982 ± 2.649
1.198ValCys: 1.198 ± 0.531
1.198ValAsp: 1.198 ± 0.724
8.383ValGlu: 8.383 ± 2.466
1.796ValPhe: 1.796 ± 0.738
9.581ValGly: 9.581 ± 0.821
1.198ValHis: 1.198 ± 0.733
2.395ValIle: 2.395 ± 0.726
2.994ValLys: 2.994 ± 1.267
5.389ValLeu: 5.389 ± 1.44
0.599ValMet: 0.599 ± 0.612
4.192ValAsn: 4.192 ± 0.797
4.79ValPro: 4.79 ± 2.784
2.395ValGln: 2.395 ± 1.244
5.988ValArg: 5.988 ± 1.773
8.383ValSer: 8.383 ± 4.989
4.79ValThr: 4.79 ± 1.323
11.377ValVal: 11.377 ± 1.988
1.796ValTrp: 1.796 ± 0.627
3.593ValTyr: 3.593 ± 1.061
0.0ValXaa: 0.0 ± 0.0
Trp
1.198TrpAla: 1.198 ± 1.341
0.0TrpCys: 0.0 ± 0.0
1.796TrpAsp: 1.796 ± 0.674
0.599TrpGlu: 0.599 ± 0.367
0.0TrpPhe: 0.0 ± 0.0
1.198TrpGly: 1.198 ± 0.531
0.0TrpHis: 0.0 ± 0.0
0.599TrpIle: 0.599 ± 0.67
2.994TrpLys: 2.994 ± 0.87
1.796TrpLeu: 1.796 ± 0.627
0.0TrpMet: 0.0 ± 0.0
0.599TrpAsn: 0.599 ± 0.631
0.0TrpPro: 0.0 ± 0.0
2.994TrpGln: 2.994 ± 1.573
1.198TrpArg: 1.198 ± 0.724
1.198TrpSer: 1.198 ± 0.724
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.198TrpTyr: 1.198 ± 0.531
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.994TyrAla: 2.994 ± 0.95
1.198TyrCys: 1.198 ± 0.531
2.994TyrAsp: 2.994 ± 1.427
1.198TyrGlu: 1.198 ± 0.836
0.599TyrPhe: 0.599 ± 0.367
1.796TyrGly: 1.796 ± 0.77
0.599TyrHis: 0.599 ± 0.872
3.593TyrIle: 3.593 ± 0.916
1.796TyrLys: 1.796 ± 0.664
4.192TyrLeu: 4.192 ± 1.309
0.599TyrMet: 0.599 ± 0.367
0.599TyrAsn: 0.599 ± 0.367
0.599TyrPro: 0.599 ± 0.367
2.994TyrGln: 2.994 ± 1.102
0.599TyrArg: 0.599 ± 0.67
4.192TyrSer: 4.192 ± 0.829
2.395TyrThr: 2.395 ± 0.607
3.593TyrVal: 3.593 ± 1.061
0.0TyrTrp: 0.0 ± 0.0
2.395TyrTyr: 2.395 ± 1.244
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.599XaaGly: 0.599 ± 0.367
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1671 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski