Pygoscelis adeliae papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treisepsilonpapillomavirus; Treisepsilonpapillomavirus 1

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A291PWL4|A0A291PWL4_9PAPI E6 OS=Pygoscelis adeliae papillomavirus 2 OX=2045113 GN=E6 PE=4 SV=1
MM1 pKa = 7.61FEE3 pKa = 5.1RR4 pKa = 11.84DD5 pKa = 3.66PTDD8 pKa = 3.02MRR10 pKa = 11.84PAHH13 pKa = 6.78LGDD16 pKa = 3.94TNITTYY22 pKa = 11.09EE23 pKa = 4.09EE24 pKa = 4.07LLIDD28 pKa = 4.9LMYY31 pKa = 8.93PTDD34 pKa = 4.28EE35 pKa = 4.54DD36 pKa = 3.99VEE38 pKa = 4.58SQSEE42 pKa = 4.23SDD44 pKa = 3.74SDD46 pKa = 4.71IEE48 pKa = 4.7GLTYY52 pKa = 10.89DD53 pKa = 3.9CTTSEE58 pKa = 4.77LYY60 pKa = 9.13CTEE63 pKa = 4.61TIDD66 pKa = 5.37SEE68 pKa = 5.09SEE70 pKa = 3.77DD71 pKa = 3.6GNAVDD76 pKa = 4.62GQVSIPAPSGPPEE89 pKa = 4.25SLSLEE94 pKa = 4.07QLSVEE99 pKa = 4.3EE100 pKa = 4.34FLEE103 pKa = 4.05EE104 pKa = 5.37AIDD107 pKa = 4.11GFYY110 pKa = 7.92PTPTGWTCHH119 pKa = 5.68YY120 pKa = 9.59CDD122 pKa = 4.66SEE124 pKa = 4.26LSPVEE129 pKa = 4.33VAAHH133 pKa = 6.61GPTDD137 pKa = 3.13PWNRR141 pKa = 11.84TGLCNMCYY149 pKa = 10.13CSGLDD154 pKa = 3.63DD155 pKa = 4.98LFSTEE160 pKa = 3.94EE161 pKa = 3.79

Molecular weight: 17.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A291PWK7|A0A291PWK7_9PAPI E1 OS=Pygoscelis adeliae papillomavirus 2 OX=2045113 GN=E1 PE=4 SV=1
MM1 pKa = 7.06PTIYY5 pKa = 10.45CPNFQTCWLVNPPDD19 pKa = 4.04GVSTQGMTSVTITCRR34 pKa = 11.84TEE36 pKa = 3.7SQSYY40 pKa = 6.06QTCSLAIVLFLKK52 pKa = 10.65KK53 pKa = 10.26AGQGLHH59 pKa = 6.54LNCIPPALPALRR71 pKa = 11.84RR72 pKa = 11.84RR73 pKa = 11.84LLGRR77 pKa = 11.84SYY79 pKa = 10.8RR80 pKa = 11.84GRR82 pKa = 11.84LDD84 pKa = 3.24ARR86 pKa = 11.84LEE88 pKa = 3.99EE89 pKa = 4.32LADD92 pKa = 4.05LGWRR96 pKa = 11.84IEE98 pKa = 4.1YY99 pKa = 10.32LLKK102 pKa = 9.71TQLPFNTATIMMPTEE117 pKa = 4.14NLLDD121 pKa = 4.25LYY123 pKa = 10.87SYY125 pKa = 10.8LGPTPDD131 pKa = 3.45EE132 pKa = 4.21EE133 pKa = 5.76AEE135 pKa = 4.15LRR137 pKa = 11.84HH138 pKa = 5.34QVHH141 pKa = 5.96VMLLEE146 pKa = 4.99AGMKK150 pKa = 9.98RR151 pKa = 11.84KK152 pKa = 8.99QRR154 pKa = 11.84HH155 pKa = 4.45LRR157 pKa = 11.84RR158 pKa = 11.84GRR160 pKa = 11.84LSGNSFFNASS170 pKa = 3.1

Molecular weight: 19.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2610

99

690

372.9

41.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.594 ± 0.475

2.222 ± 0.508

6.054 ± 0.499

6.705 ± 0.806

3.142 ± 0.311

7.318 ± 0.724

1.801 ± 0.098

4.1 ± 0.322

3.602 ± 0.616

9.732 ± 0.861

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.648 ± 0.212

3.793 ± 0.661

7.625 ± 1.027

3.64 ± 0.367

7.318 ± 0.503

8.276 ± 0.345

7.011 ± 0.575

5.441 ± 0.864

1.379 ± 0.111

3.602 ± 0.364
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski