Candidatus Competibacter denitrificans Run_A_D11

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Candidatus Competibacteraceae; Candidatus Competibacter; Candidatus Competibacter denitrificans

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4014 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W6M8U7|W6M8U7_9GAMM Putative F5/8 type C domain-containing protein OS=Candidatus Competibacter denitrificans Run_A_D11 OX=1400863 GN=BN873_380056 PE=4 SV=1
MM1 pKa = 7.56KK2 pKa = 10.35KK3 pKa = 10.52YY4 pKa = 9.42MCLICGFIYY13 pKa = 10.53DD14 pKa = 4.72EE15 pKa = 4.36EE16 pKa = 5.12KK17 pKa = 10.61GWPDD21 pKa = 4.04DD22 pKa = 4.53GIAPGTAWDD31 pKa = 4.64DD32 pKa = 3.98VPLTWTCPEE41 pKa = 4.29CGAAKK46 pKa = 10.35DD47 pKa = 3.73DD48 pKa = 4.15FEE50 pKa = 4.37MVEE53 pKa = 3.91II54 pKa = 4.83

Molecular weight: 6.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W6M7V0|W6M7V0_9GAMM Uncharacterized protein OS=Candidatus Competibacter denitrificans Run_A_D11 OX=1400863 GN=BN873_610114 PE=4 SV=1
MM1 pKa = 7.59ALLGTGLTALRR12 pKa = 11.84ILRR15 pKa = 11.84GTIRR19 pKa = 11.84PTLLGTGLALIVRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84AIWLALRR41 pKa = 11.84TGLIGLSQGG50 pKa = 3.4

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4014

0

4014

1230550

17

4026

306.6

33.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.148 ± 0.046

0.991 ± 0.013

5.232 ± 0.03

5.765 ± 0.035

3.589 ± 0.029

7.668 ± 0.035

2.276 ± 0.021

5.102 ± 0.032

3.335 ± 0.034

11.519 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.097 ± 0.021

2.89 ± 0.027

5.443 ± 0.034

4.21 ± 0.028

7.189 ± 0.046

5.144 ± 0.033

5.334 ± 0.041

6.939 ± 0.033

1.516 ± 0.019

2.612 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski