Fenneropenaeus chinensis hepatopancreatic densovirus (isolate Shrimp/China/HB/2008)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Densovirinae; Hepandensovirus; Decapod hepandensovirus 1; Fenneropenaeus chinensis hepandensovirus

Average proteome isoelectric point is 7.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E2E2D1|E2E2D1_FCDNV Truncated structural protein OS=Fenneropenaeus chinensis hepatopancreatic densovirus (isolate Shrimp/China/HB/2008) OX=1556324 GN=CP PE=4 SV=1
MM1 pKa = 7.54SPTRR5 pKa = 11.84KK6 pKa = 9.67GGNYY10 pKa = 8.53FASKK14 pKa = 10.31HH15 pKa = 4.7FQSKK19 pKa = 10.11KK20 pKa = 9.13KK21 pKa = 10.55NKK23 pKa = 9.3LGKK26 pKa = 10.6VKK28 pKa = 10.68DD29 pKa = 3.75LLASKK34 pKa = 10.43KK35 pKa = 10.17KK36 pKa = 9.24EE37 pKa = 3.79RR38 pKa = 11.84KK39 pKa = 9.33FKK41 pKa = 11.23GKK43 pKa = 10.76GNTLSEE49 pKa = 4.43EE50 pKa = 4.36PSTSGWKK57 pKa = 10.55DD58 pKa = 3.24PVRR61 pKa = 11.84QRR63 pKa = 11.84FPALEE68 pKa = 3.86QEE70 pKa = 4.41EE71 pKa = 4.88RR72 pKa = 11.84NTFAGLLAIEE82 pKa = 4.84AAPDD86 pKa = 3.36QRR88 pKa = 11.84QLGRR92 pKa = 11.84DD93 pKa = 3.64SNNQLALVQRR103 pKa = 11.84DD104 pKa = 3.21TRR106 pKa = 11.84VAVRR110 pKa = 11.84QSTNRR115 pKa = 11.84RR116 pKa = 11.84EE117 pKa = 3.98ALEE120 pKa = 4.16VVRR123 pKa = 11.84AATQAIRR130 pKa = 11.84SGGDD134 pKa = 2.78RR135 pKa = 11.84LAEE138 pKa = 3.91LVQTYY143 pKa = 11.05ASGFSDD149 pKa = 3.04STEE152 pKa = 3.73IVEE155 pKa = 5.12LRR157 pKa = 11.84QEE159 pKa = 4.14DD160 pKa = 4.44RR161 pKa = 11.84IQRR164 pKa = 11.84DD165 pKa = 2.98IFQEE169 pKa = 3.97EE170 pKa = 4.76GQNLLAIEE178 pKa = 4.33IALEE182 pKa = 4.68GPSSVTQQFDD192 pKa = 3.5QEE194 pKa = 4.07KK195 pKa = 8.17TPAVKK200 pKa = 10.14RR201 pKa = 11.84ALEE204 pKa = 3.98LTQEE208 pKa = 4.21EE209 pKa = 4.48EE210 pKa = 3.72QLEE213 pKa = 4.38RR214 pKa = 11.84IEE216 pKa = 4.09NAKK219 pKa = 10.42KK220 pKa = 10.62YY221 pKa = 9.14IEE223 pKa = 4.1EE224 pKa = 4.37VIEE227 pKa = 3.86EE228 pKa = 4.31TNRR231 pKa = 11.84EE232 pKa = 3.79FEE234 pKa = 4.2DD235 pKa = 3.5QVRR238 pKa = 11.84QEE240 pKa = 4.25TSASAEE246 pKa = 3.95DD247 pKa = 4.12TMASAAPTPMEE258 pKa = 3.89TSEE261 pKa = 4.57PGVTAAPHH269 pKa = 5.26QKK271 pKa = 9.87SAAGGGGGGGSGGEE285 pKa = 3.79TAGYY289 pKa = 9.99GKK291 pKa = 8.49NTNDD295 pKa = 2.63AFQRR299 pKa = 11.84HH300 pKa = 5.5RR301 pKa = 11.84NRR303 pKa = 11.84PIDD306 pKa = 3.9LKK308 pKa = 11.21HH309 pKa = 7.3IGDD312 pKa = 4.01NVYY315 pKa = 10.11VAQRR319 pKa = 11.84VYY321 pKa = 10.73KK322 pKa = 10.8VEE324 pKa = 4.25AEE326 pKa = 4.33CKK328 pKa = 10.71NIDD331 pKa = 5.09EE332 pKa = 4.64KK333 pKa = 11.16LTWSNTANNEE343 pKa = 3.75YY344 pKa = 9.68TRR346 pKa = 11.84RR347 pKa = 11.84LMGTNGNSDD356 pKa = 3.27KK357 pKa = 11.66GNVKK361 pKa = 10.37FNFTAPINGSIGMGNLALGNYY382 pKa = 8.01INAWGIDD389 pKa = 3.87NIAKK393 pKa = 10.25SEE395 pKa = 4.13DD396 pKa = 2.99SWAIIATRR404 pKa = 11.84GKK406 pKa = 9.59MNHH409 pKa = 5.66LQAFEE414 pKa = 4.58MIPPNARR421 pKa = 11.84RR422 pKa = 11.84NCSRR426 pKa = 11.84VYY428 pKa = 10.3KK429 pKa = 10.44CSSTVWW435 pKa = 3.08

Molecular weight: 48.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E2E2D1|E2E2D1_FCDNV Truncated structural protein OS=Fenneropenaeus chinensis hepatopancreatic densovirus (isolate Shrimp/China/HB/2008) OX=1556324 GN=CP PE=4 SV=1
MM1 pKa = 7.14FRR3 pKa = 11.84QVMKK7 pKa = 10.6LKK9 pKa = 10.53RR10 pKa = 11.84EE11 pKa = 3.99GMVDD15 pKa = 3.56HH16 pKa = 6.85NPLVTFYY23 pKa = 11.15SGIIVKK29 pKa = 10.17FEE31 pKa = 3.69HH32 pKa = 6.45WNNNVSKK39 pKa = 10.65VRR41 pKa = 11.84KK42 pKa = 8.9FLYY45 pKa = 10.37KK46 pKa = 10.25FAQWLYY52 pKa = 10.68KK53 pKa = 9.93EE54 pKa = 4.31CTYY57 pKa = 10.79IHH59 pKa = 6.67NISAAVHH66 pKa = 6.28DD67 pKa = 4.36RR68 pKa = 11.84CKK70 pKa = 10.97DD71 pKa = 3.59DD72 pKa = 3.71CCKK75 pKa = 11.01DD76 pKa = 3.48SANKK80 pKa = 9.09VCKK83 pKa = 10.34NIYY86 pKa = 9.71GPHH89 pKa = 5.59LHH91 pKa = 6.93ILLEE95 pKa = 4.46SVNEE99 pKa = 4.01NWSKK103 pKa = 10.24SSKK106 pKa = 9.43RR107 pKa = 11.84VLFRR111 pKa = 11.84GYY113 pKa = 10.66EE114 pKa = 3.98KK115 pKa = 10.38ILQHH119 pKa = 6.0EE120 pKa = 4.48NKK122 pKa = 9.96QLWEE126 pKa = 4.18DD127 pKa = 3.62LGLQKK132 pKa = 9.75TSPPSMSLWDD142 pKa = 3.46GEE144 pKa = 4.3MFKK147 pKa = 10.43WYY149 pKa = 9.05MFRR152 pKa = 11.84DD153 pKa = 3.22RR154 pKa = 11.84KK155 pKa = 8.23YY156 pKa = 9.98AKK158 pKa = 10.04VHH160 pKa = 4.11GTYY163 pKa = 10.15YY164 pKa = 10.34YY165 pKa = 11.0SSNEE169 pKa = 3.77EE170 pKa = 4.16LLSKK174 pKa = 9.86LVKK177 pKa = 10.36MKK179 pKa = 9.44DD180 pKa = 3.14TQEE183 pKa = 4.66RR184 pKa = 11.84DD185 pKa = 3.3DD186 pKa = 5.25LYY188 pKa = 11.59EE189 pKa = 4.19KK190 pKa = 10.82ACQFKK195 pKa = 10.39KK196 pKa = 10.78DD197 pKa = 3.26KK198 pKa = 10.64NAARR202 pKa = 11.84KK203 pKa = 9.47IEE205 pKa = 4.08NSTAKK210 pKa = 9.69TLDD213 pKa = 3.61GADD216 pKa = 3.48SDD218 pKa = 4.58NIRR221 pKa = 11.84LSSSRR226 pKa = 11.84AIYY229 pKa = 10.52LEE231 pKa = 3.77NLQVLEE237 pKa = 4.51KK238 pKa = 10.97YY239 pKa = 9.74LVKK242 pKa = 10.5HH243 pKa = 5.53KK244 pKa = 10.49CYY246 pKa = 10.12TIQDD250 pKa = 3.9FKK252 pKa = 11.29MMQRR256 pKa = 11.84NEE258 pKa = 3.77DD259 pKa = 4.41EE260 pKa = 3.64IWVNYY265 pKa = 9.59MYY267 pKa = 10.34DD268 pKa = 3.18IQNLEE273 pKa = 3.97KK274 pKa = 10.85VIEE277 pKa = 4.25KK278 pKa = 10.44LNIMEE283 pKa = 4.71YY284 pKa = 10.69SLQQADD290 pKa = 4.32YY291 pKa = 10.9IEE293 pKa = 4.88GNTWIGEE300 pKa = 4.27DD301 pKa = 3.24LWNTNSAYY309 pKa = 9.59MRR311 pKa = 11.84TVKK314 pKa = 10.47RR315 pKa = 11.84GTDD318 pKa = 2.6RR319 pKa = 11.84YY320 pKa = 8.05YY321 pKa = 10.05WYY323 pKa = 9.9IQRR326 pKa = 11.84HH327 pKa = 4.17VSNRR331 pKa = 11.84ASLIGQSRR339 pKa = 11.84QICIDD344 pKa = 3.29GAYY347 pKa = 10.15MMFNIIDD354 pKa = 3.64NMRR357 pKa = 11.84VEE359 pKa = 4.74SRR361 pKa = 11.84PKK363 pKa = 9.43TIPIISKK370 pKa = 9.94NKK372 pKa = 6.87TVQWIQDD379 pKa = 3.46FMDD382 pKa = 5.22IIHH385 pKa = 6.93GNLPKK390 pKa = 10.04INCMMLYY397 pKa = 10.73GNSNSGKK404 pKa = 7.27TQLIEE409 pKa = 4.17ALTGLVNTAIMTNVGDD425 pKa = 3.57GGTFHH430 pKa = 7.44FSNITEE436 pKa = 3.89MSTIVVGNEE445 pKa = 3.64TKK447 pKa = 10.34IRR449 pKa = 11.84TQTIEE454 pKa = 3.66QWKK457 pKa = 8.9GLCGGEE463 pKa = 3.99NVTMPMKK470 pKa = 10.34YY471 pKa = 9.43KK472 pKa = 9.73EE473 pKa = 4.68HH474 pKa = 5.97KK475 pKa = 7.9THH477 pKa = 6.63MFRR480 pKa = 11.84KK481 pKa = 9.29PVFLTNQHH489 pKa = 6.26HH490 pKa = 6.51PLVDD494 pKa = 3.13ISHH497 pKa = 6.45YY498 pKa = 10.31DD499 pKa = 3.36DD500 pKa = 4.04RR501 pKa = 11.84RR502 pKa = 11.84AIEE505 pKa = 4.28NRR507 pKa = 11.84SFMYY511 pKa = 10.08KK512 pKa = 9.92VEE514 pKa = 4.53LGSEE518 pKa = 4.2PVNAHH523 pKa = 5.48IKK525 pKa = 10.03FPNRR529 pKa = 11.84MIPIKK534 pKa = 10.4KK535 pKa = 9.95NPEE538 pKa = 3.49LTQFVLASMQYY549 pKa = 9.65VHH551 pKa = 6.69TNYY554 pKa = 9.66MNRR557 pKa = 11.84PDD559 pKa = 3.86KK560 pKa = 10.74KK561 pKa = 10.69FKK563 pKa = 10.42IGFFNKK569 pKa = 10.31LYY571 pKa = 10.73DD572 pKa = 3.86ALFEE576 pKa = 4.33NSS578 pKa = 3.11

Molecular weight: 68.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1440

427

578

480.0

55.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.347 ± 1.66

1.528 ± 0.332

5.139 ± 0.301

7.917 ± 0.914

4.167 ± 0.586

5.903 ± 0.88

2.431 ± 0.53

5.694 ± 0.764

9.028 ± 0.875

6.25 ± 0.425

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.889 ± 0.881

7.083 ± 0.265

2.986 ± 0.212

4.444 ± 0.518

5.556 ± 0.694

6.111 ± 0.234

5.069 ± 0.494

5.556 ± 0.391

1.736 ± 0.234

4.167 ± 0.832
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski