Ovine gammaherpesvirus 2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Macavirus

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 74 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q2VSJ2|Q2VSJ2_9GAMA ORF49 OS=Ovine gammaherpesvirus 2 OX=10398 GN=OvHV-2gp47 PE=4 SV=1
MM1 pKa = 7.86RR2 pKa = 11.84FPHH5 pKa = 7.06KK6 pKa = 10.6LLLLEE11 pKa = 4.23ILCVLAALNICITSFTLGCFALYY34 pKa = 9.82RR35 pKa = 11.84QLVHH39 pKa = 7.97ISIGNLSFPHH49 pKa = 6.92RR50 pKa = 11.84DD51 pKa = 2.8GDD53 pKa = 3.94EE54 pKa = 4.34VVRR57 pKa = 11.84LMYY60 pKa = 10.21IPPLNDD66 pKa = 2.93SVEE69 pKa = 4.14FSYY72 pKa = 10.96PPTVFPTEE80 pKa = 4.37EE81 pKa = 3.99EE82 pKa = 4.07DD83 pKa = 4.37LDD85 pKa = 4.13YY86 pKa = 11.52DD87 pKa = 4.26SDD89 pKa = 3.73EE90 pKa = 4.45LLYY93 pKa = 10.68EE94 pKa = 4.79DD95 pKa = 5.49EE96 pKa = 4.81YY97 pKa = 11.66SDD99 pKa = 3.57PTVEE103 pKa = 4.12PWLDD107 pKa = 3.48YY108 pKa = 11.25YY109 pKa = 11.15DD110 pKa = 4.44YY111 pKa = 11.01EE112 pKa = 6.05SEE114 pKa = 4.26DD115 pKa = 2.8SWYY118 pKa = 10.81YY119 pKa = 11.27DD120 pKa = 3.13SS121 pKa = 5.61

Molecular weight: 14.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q2VSN4|Q2VSN4_9GAMA Ov3.5 OS=Ovine gammaherpesvirus 2 OX=10398 GN=Ov3.5 PE=4 SV=1
MM1 pKa = 6.91FQSILSQRR9 pKa = 11.84PICALSSLPAKK20 pKa = 10.27RR21 pKa = 11.84KK22 pKa = 9.09VAGLNAHH29 pKa = 6.28RR30 pKa = 11.84KK31 pKa = 8.91VYY33 pKa = 9.24KK34 pKa = 10.27QLMLYY39 pKa = 10.01TSFGKK44 pKa = 10.39VNKK47 pKa = 9.83FLGLQHH53 pKa = 6.92ICPKK57 pKa = 9.4KK58 pKa = 9.8VKK60 pKa = 9.83YY61 pKa = 10.4KK62 pKa = 10.98LFFEE66 pKa = 4.74VSLGPRR72 pKa = 11.84IADD75 pKa = 3.51IIVLASQGEE84 pKa = 3.85QRR86 pKa = 11.84MCYY89 pKa = 9.71IIEE92 pKa = 4.52LKK94 pKa = 9.51TCLGAHH100 pKa = 6.32FVPNPIKK107 pKa = 10.48LAQRR111 pKa = 11.84SQGLCQLHH119 pKa = 7.5DD120 pKa = 3.69STKK123 pKa = 9.85YY124 pKa = 10.34LCNNAPRR131 pKa = 11.84GEE133 pKa = 4.21EE134 pKa = 3.58RR135 pKa = 11.84WVVQAHH141 pKa = 6.92LLFKK145 pKa = 10.84SQVSLKK151 pKa = 8.68TLHH154 pKa = 6.55SEE156 pKa = 3.93HH157 pKa = 6.69PTFPFALIQSKK168 pKa = 10.72EE169 pKa = 3.96EE170 pKa = 3.81ALSAFLRR177 pKa = 11.84LRR179 pKa = 11.84EE180 pKa = 4.09DD181 pKa = 3.82AEE183 pKa = 4.43FKK185 pKa = 10.45QVLRR189 pKa = 11.84QGCPPAEE196 pKa = 4.26VAKK199 pKa = 10.49GMRR202 pKa = 11.84LLGPKK207 pKa = 8.36PQEE210 pKa = 3.73RR211 pKa = 11.84ARR213 pKa = 11.84YY214 pKa = 8.63KK215 pKa = 9.85PPKK218 pKa = 9.48VPRR221 pKa = 11.84AQAQRR226 pKa = 11.84LALPKK231 pKa = 10.57ARR233 pKa = 11.84GRR235 pKa = 11.84KK236 pKa = 8.88QNASHH241 pKa = 7.12KK242 pKa = 10.31KK243 pKa = 9.06GAVKK247 pKa = 10.68NGAA250 pKa = 3.54

Molecular weight: 28.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

74

0

74

35095

61

2624

474.3

52.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.106 ± 0.23

2.499 ± 0.185

4.36 ± 0.127

5.759 ± 0.411

4.499 ± 0.228

5.271 ± 0.506

2.764 ± 0.095

4.79 ± 0.163

4.739 ± 0.17

10.794 ± 0.287

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.117 ± 0.104

4.277 ± 0.171

6.517 ± 0.437

4.251 ± 0.188

4.502 ± 0.172

8.619 ± 0.26

5.927 ± 0.182

6.585 ± 0.206

1.091 ± 0.056

3.522 ± 0.139
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski