Serratia nematodiphila DZ0503SBS1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia nematodiphila

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2715 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A086G9A7|A0A086G9A7_9GAMM Uncharacterized protein OS=Serratia nematodiphila DZ0503SBS1 OX=1449981 GN=AK51_25390 PE=3 SV=1
MM1 pKa = 7.62FDD3 pKa = 2.9VLMYY7 pKa = 11.04LFEE10 pKa = 4.53TYY12 pKa = 9.29IHH14 pKa = 6.7NEE16 pKa = 3.36PEE18 pKa = 3.83MRR20 pKa = 11.84VDD22 pKa = 4.17QDD24 pKa = 3.69QLTDD28 pKa = 4.06DD29 pKa = 4.58LAQAGFHH36 pKa = 6.64QDD38 pKa = 3.72DD39 pKa = 4.92IYY41 pKa = 11.84NALNWLEE48 pKa = 4.3KK49 pKa = 10.72LADD52 pKa = 3.84LQEE55 pKa = 4.58GQNAPYY61 pKa = 10.61FMDD64 pKa = 4.97ADD66 pKa = 4.08PLAMRR71 pKa = 11.84IYY73 pKa = 10.25TEE75 pKa = 4.22EE76 pKa = 3.69EE77 pKa = 3.8NARR80 pKa = 11.84LDD82 pKa = 3.63AGCRR86 pKa = 11.84GFLLFLEE93 pKa = 4.79QIQVLNLEE101 pKa = 4.22TRR103 pKa = 11.84EE104 pKa = 3.96MVIDD108 pKa = 3.93RR109 pKa = 11.84VMALDD114 pKa = 3.52NAEE117 pKa = 4.78FDD119 pKa = 4.9LEE121 pKa = 4.12DD122 pKa = 4.22LKK124 pKa = 11.14WVVLMVLFNIPGYY137 pKa = 10.27EE138 pKa = 3.8SAYY141 pKa = 10.17QQMEE145 pKa = 4.03EE146 pKa = 4.66LLFEE150 pKa = 4.54VNEE153 pKa = 5.12GYY155 pKa = 10.8LHH157 pKa = 7.0

Molecular weight: 18.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W9F104|A0A1W9F104_9GAMM Propionate catabolism operon regulatory protein OS=Serratia nematodiphila DZ0503SBS1 OX=1449981 GN=AK51_28565 PE=4 SV=1
CC1 pKa = 7.85ILVCIFGSVYY11 pKa = 10.74CLFSPRR17 pKa = 11.84NPRR20 pKa = 11.84HH21 pKa = 5.1VATFGHH27 pKa = 6.7LFGRR31 pKa = 11.84LSTLFGIKK39 pKa = 10.14VEE41 pKa = 4.31TRR43 pKa = 11.84VPADD47 pKa = 3.03AANNGNCIYY56 pKa = 10.43IANHH60 pKa = 4.79QNNYY64 pKa = 11.15DD65 pKa = 3.46MVTASNIVQPRR76 pKa = 11.84TVTVGKK82 pKa = 10.39KK83 pKa = 10.21SGVDD87 pKa = 3.3PVFGPLYY94 pKa = 9.71WLTGNLLIDD103 pKa = 3.8RR104 pKa = 11.84DD105 pKa = 3.87NRR107 pKa = 11.84AKK109 pKa = 9.72RR110 pKa = 11.84TAPSPRR116 pKa = 11.84WRR118 pKa = 11.84SSSKK122 pKa = 10.43RR123 pKa = 11.84KK124 pKa = 7.61TFRR127 pKa = 11.84SGCSRR132 pKa = 11.84KK133 pKa = 10.13DD134 pKa = 3.28PQPRR138 pKa = 11.84SWW140 pKa = 3.21

Molecular weight: 15.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2715

0

2715

493119

31

1074

181.6

20.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.829 ± 0.062

1.247 ± 0.02

5.009 ± 0.045

5.301 ± 0.051

3.674 ± 0.036

7.503 ± 0.056

2.317 ± 0.033

5.299 ± 0.043

3.689 ± 0.046

11.199 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.715 ± 0.028

3.329 ± 0.033

4.723 ± 0.041

4.847 ± 0.051

6.499 ± 0.052

5.786 ± 0.045

4.986 ± 0.037

6.859 ± 0.045

1.473 ± 0.024

2.717 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski