Phenylobacterium parvum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2596 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z3HNY5|A0A2Z3HNY5_9CAUL DUF1289 domain-containing protein OS=Phenylobacterium parvum OX=2201350 GN=HYN04_04015 PE=4 SV=1
MM1 pKa = 6.59GTYY4 pKa = 10.08YY5 pKa = 10.88YY6 pKa = 10.72AGHH9 pKa = 7.17TYY11 pKa = 10.41QIVKK15 pKa = 8.82TAMTWAAAKK24 pKa = 10.02AWAEE28 pKa = 4.14SQGGHH33 pKa = 6.4LAYY36 pKa = 8.99ITSAAEE42 pKa = 3.8NQALVSMTQLTTGLDD57 pKa = 4.0LAPSAADD64 pKa = 3.4GGGARR69 pKa = 11.84YY70 pKa = 8.77LWLGGSDD77 pKa = 3.72ADD79 pKa = 5.5VEE81 pKa = 4.88GTWRR85 pKa = 11.84WGDD88 pKa = 3.47GTLVTSGYY96 pKa = 9.68SNWGAGALGVEE107 pKa = 4.24PDD109 pKa = 3.7NYY111 pKa = 11.15GGVQDD116 pKa = 5.06AMAFGLQSWPQPSGGIGTAFKK137 pKa = 10.63WNDD140 pKa = 3.05INPANSLYY148 pKa = 10.57FVVEE152 pKa = 3.73WDD154 pKa = 4.21HH155 pKa = 7.8IRR157 pKa = 11.84GTTGADD163 pKa = 3.5SISQTGNATVYY174 pKa = 10.58GLEE177 pKa = 4.25GNDD180 pKa = 4.38IISLAQGSNYY190 pKa = 9.74LRR192 pKa = 11.84GDD194 pKa = 3.59AGDD197 pKa = 4.13DD198 pKa = 3.79SVFGGSGFDD207 pKa = 4.96DD208 pKa = 3.42INGNMGADD216 pKa = 3.54TLRR219 pKa = 11.84GNDD222 pKa = 3.63GEE224 pKa = 4.26DD225 pKa = 2.89WVVGGKK231 pKa = 10.32DD232 pKa = 3.05NDD234 pKa = 4.99LIFGDD239 pKa = 3.73AAFDD243 pKa = 3.41IVYY246 pKa = 10.68GNMGNDD252 pKa = 3.62TVDD255 pKa = 3.22GGAGNDD261 pKa = 3.47WVRR264 pKa = 11.84GGQGDD269 pKa = 4.02DD270 pKa = 3.76SVVSGAGDD278 pKa = 3.21DD279 pKa = 3.97WLWGDD284 pKa = 4.54RR285 pKa = 11.84GNDD288 pKa = 3.95TISGGAGADD297 pKa = 3.45LFYY300 pKa = 11.15SFAGAGIDD308 pKa = 3.86RR309 pKa = 11.84ITDD312 pKa = 3.67FSYY315 pKa = 11.63AEE317 pKa = 4.05GDD319 pKa = 3.57RR320 pKa = 11.84LKK322 pKa = 11.36LEE324 pKa = 4.64GGPSYY329 pKa = 11.06SVSQVGADD337 pKa = 3.54VIVDD341 pKa = 3.89MGNGDD346 pKa = 3.66QVILVGVSLASLGSGWILL364 pKa = 3.58

Molecular weight: 37.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z3HYR7|A0A2Z3HYR7_9CAUL TetR/AcrR family transcriptional regulator OS=Phenylobacterium parvum OX=2201350 GN=HYN04_11110 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.56RR3 pKa = 11.84TFQPSRR9 pKa = 11.84LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 3.78GWRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.5NGRR28 pKa = 11.84KK29 pKa = 9.27VIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.46GRR39 pKa = 11.84KK40 pKa = 8.99RR41 pKa = 11.84LTAA44 pKa = 4.18

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2596

0

2596

863946

28

4068

332.8

35.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.986 ± 0.067

0.765 ± 0.015

5.745 ± 0.039

5.69 ± 0.058

3.531 ± 0.03

9.696 ± 0.11

1.665 ± 0.026

4.061 ± 0.024

2.478 ± 0.035

10.351 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.174 ± 0.027

2.193 ± 0.041

5.915 ± 0.059

2.784 ± 0.026

8.037 ± 0.077

5.142 ± 0.061

4.992 ± 0.075

7.425 ± 0.037

1.411 ± 0.023

1.958 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski