Reinekea thalattae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Saccharospirillaceae; Reinekea

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2651 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C8Z5F9|A0A5C8Z5F9_9GAMM VOC family protein OS=Reinekea thalattae OX=2593301 GN=FME95_01110 PE=4 SV=1
MM1 pKa = 8.42KK2 pKa = 10.04MMSVWVSALLALFVSACTSVNDD24 pKa = 4.07DD25 pKa = 3.95DD26 pKa = 4.82KK27 pKa = 11.93VVIGVATDD35 pKa = 3.35AEE37 pKa = 4.49KK38 pKa = 10.62QVLIHH43 pKa = 5.76YY44 pKa = 7.29LPWFADD50 pKa = 3.31EE51 pKa = 5.83NYY53 pKa = 9.28AQEE56 pKa = 4.37PSRR59 pKa = 11.84HH60 pKa = 5.04WSHH63 pKa = 5.58GTVNEE68 pKa = 4.13ALVGEE73 pKa = 4.56YY74 pKa = 10.33DD75 pKa = 3.75SQSWATQLYY84 pKa = 10.11HH85 pKa = 6.95ILLSAAVGVDD95 pKa = 2.78GAMINIRR102 pKa = 11.84TDD104 pKa = 3.19YY105 pKa = 11.38DD106 pKa = 3.5KK107 pKa = 11.47DD108 pKa = 3.44ALSIFMEE115 pKa = 4.08SLEE118 pKa = 4.21RR119 pKa = 11.84VRR121 pKa = 11.84AVYY124 pKa = 10.21PDD126 pKa = 3.87FAYY129 pKa = 10.45HH130 pKa = 6.53ISASIDD136 pKa = 3.56DD137 pKa = 3.86QDD139 pKa = 3.58KK140 pKa = 10.7TEE142 pKa = 4.89ALAQQEE148 pKa = 4.28FEE150 pKa = 4.81YY151 pKa = 10.55IAEE154 pKa = 4.94LIDD157 pKa = 4.17NYY159 pKa = 8.15TTYY162 pKa = 10.88LHH164 pKa = 7.04KK165 pKa = 10.76NGKK168 pKa = 8.44PVIFIWAYY176 pKa = 11.28NNLTPAQYY184 pKa = 10.64RR185 pKa = 11.84SIADD189 pKa = 3.27QVFGEE194 pKa = 4.64DD195 pKa = 4.29EE196 pKa = 4.57VILVQNDD203 pKa = 2.72IDD205 pKa = 3.92TSAVADD211 pKa = 4.99EE212 pKa = 4.5INMNAFYY219 pKa = 9.83PWVKK223 pKa = 10.51GFADD227 pKa = 5.07DD228 pKa = 4.21GSDD231 pKa = 3.03WGEE234 pKa = 4.17VYY236 pKa = 10.95LDD238 pKa = 3.07WFYY241 pKa = 10.99RR242 pKa = 11.84TSADD246 pKa = 3.41YY247 pKa = 9.26LTDD250 pKa = 3.41NKK252 pKa = 10.72QEE254 pKa = 4.37FIVAGVWPGFDD265 pKa = 3.23DD266 pKa = 5.47RR267 pKa = 11.84QVNWYY272 pKa = 9.76GDD274 pKa = 3.76DD275 pKa = 3.72YY276 pKa = 11.39AGRR279 pKa = 11.84WIDD282 pKa = 3.54RR283 pKa = 11.84ADD285 pKa = 3.22GAIYY289 pKa = 10.61DD290 pKa = 4.26NTWQLIDD297 pKa = 3.59TFNNEE302 pKa = 3.63WQQDD306 pKa = 3.25IATEE310 pKa = 4.8DD311 pKa = 3.39ISIDD315 pKa = 3.19WVVIEE320 pKa = 4.35TWNDD324 pKa = 3.13FNEE327 pKa = 4.58GSEE330 pKa = 4.22IEE332 pKa = 4.91PIAATADD339 pKa = 3.76TEE341 pKa = 4.44SFQYY345 pKa = 11.05LKK347 pKa = 10.26LTDD350 pKa = 3.73SYY352 pKa = 10.42ITNFKK357 pKa = 9.74ATDD360 pKa = 3.65SVLDD364 pKa = 4.43ADD366 pKa = 5.93DD367 pKa = 4.59EE368 pKa = 4.55LLNAAVKK375 pKa = 10.1IYY377 pKa = 10.25QAAKK381 pKa = 10.5LIDD384 pKa = 4.37DD385 pKa = 4.79GDD387 pKa = 3.94RR388 pKa = 11.84ASANYY393 pKa = 10.41YY394 pKa = 8.7STLEE398 pKa = 4.06QAIEE402 pKa = 4.31AYY404 pKa = 10.4LKK406 pKa = 10.8ADD408 pKa = 3.5AEE410 pKa = 4.52GASDD414 pKa = 3.88YY415 pKa = 11.59AEE417 pKa = 4.38TIIDD421 pKa = 3.74GG422 pKa = 3.98

Molecular weight: 47.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C8ZBJ2|A0A5C8ZBJ2_9GAMM MATE family efflux transporter OS=Reinekea thalattae OX=2593301 GN=FME95_09855 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.14RR12 pKa = 11.84KK13 pKa = 8.92RR14 pKa = 11.84SHH16 pKa = 6.09GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.46NGRR28 pKa = 11.84KK29 pKa = 8.96VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84AALSAA44 pKa = 4.04

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2651

0

2651

861729

18

2531

325.1

36.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.235 ± 0.047

0.954 ± 0.015

5.662 ± 0.043

6.357 ± 0.045

4.043 ± 0.036

6.574 ± 0.04

2.113 ± 0.024

6.409 ± 0.039

4.792 ± 0.042

10.705 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.422 ± 0.025

4.076 ± 0.033

3.832 ± 0.031

5.042 ± 0.041

4.572 ± 0.036

6.932 ± 0.045

5.191 ± 0.039

6.832 ± 0.038

1.248 ± 0.018

3.009 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski