Galinsoga mosaic virus (GaMV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Gallantivirus

Average proteome isoelectric point is 7.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|O12304|O12304_GAMV Capsid protein OS=Galinsoga mosaic virus OX=60714 PE=3 SV=1
MM1 pKa = 7.72KK2 pKa = 10.29YY3 pKa = 10.09CRR5 pKa = 11.84CSDD8 pKa = 3.73TAPTDD13 pKa = 3.96HH14 pKa = 6.62ITLLFVIFILSGLILSLCTNITSNNYY40 pKa = 9.08EE41 pKa = 3.76NHH43 pKa = 4.44TTEE46 pKa = 6.11NKK48 pKa = 7.9TQWITIGGQQQ58 pKa = 3.46

Molecular weight: 6.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|O12302|O12302_GAMV Movement protein OS=Galinsoga mosaic virus OX=60714 PE=4 SV=1
MM1 pKa = 7.3GAISKK6 pKa = 9.91ISKK9 pKa = 9.44ISSFVVAGIVAYY21 pKa = 9.54KK22 pKa = 10.18VGKK25 pKa = 8.47ATYY28 pKa = 9.54NAFRR32 pKa = 11.84YY33 pKa = 9.63RR34 pKa = 11.84NQEE37 pKa = 4.06SITAARR43 pKa = 11.84DD44 pKa = 3.12LQAAVEE50 pKa = 4.17AVEE53 pKa = 4.15EE54 pKa = 4.14QPEE57 pKa = 4.19FGSVEE62 pKa = 4.08EE63 pKa = 4.67CLEE66 pKa = 4.14EE67 pKa = 4.45TPASQSEE74 pKa = 4.15RR75 pKa = 11.84TTIQNEE81 pKa = 3.62GDD83 pKa = 3.72LAKK86 pKa = 10.23MPVSRR91 pKa = 11.84KK92 pKa = 8.8RR93 pKa = 11.84RR94 pKa = 11.84IRR96 pKa = 11.84NRR98 pKa = 11.84KK99 pKa = 7.53HH100 pKa = 5.53GRR102 pKa = 11.84FVSYY106 pKa = 10.43LVNEE110 pKa = 4.73AKK112 pKa = 10.67AEE114 pKa = 4.02YY115 pKa = 9.95GLPKK119 pKa = 8.89PTEE122 pKa = 4.26AYY124 pKa = 10.2RR125 pKa = 11.84LMVGGFLNRR134 pKa = 11.84LCKK137 pKa = 9.86EE138 pKa = 3.83WGVVTSHH145 pKa = 5.5THH147 pKa = 3.93QAVSIALPLVFVPTKK162 pKa = 10.18FDD164 pKa = 3.44VMGKK168 pKa = 10.22AMCATTRR175 pKa = 11.84TNQLIGEE182 pKa = 4.32NSTDD186 pKa = 3.7QATGWFDD193 pKa = 3.3NVLGIGGGVGLRR205 pKa = 11.84FLGKK209 pKa = 8.09XGCLEE214 pKa = 3.78RR215 pKa = 11.84RR216 pKa = 11.84LGFSTTVSRR225 pKa = 11.84GSHH228 pKa = 6.85PDD230 pKa = 3.46LVVKK234 pKa = 10.26PSGRR238 pKa = 11.84PEE240 pKa = 3.84KK241 pKa = 10.24QRR243 pKa = 11.84QLSAIVDD250 pKa = 3.31SWGRR254 pKa = 11.84KK255 pKa = 8.08PLVFTITRR263 pKa = 11.84LANLRR268 pKa = 11.84RR269 pKa = 11.84GMIEE273 pKa = 3.3RR274 pKa = 11.84MYY276 pKa = 10.87YY277 pKa = 9.02VEE279 pKa = 4.12RR280 pKa = 11.84DD281 pKa = 3.55KK282 pKa = 11.82NLVEE286 pKa = 4.43PPAPSVDD293 pKa = 3.61FRR295 pKa = 11.84LPHH298 pKa = 6.49FSSAFKK304 pKa = 10.62KK305 pKa = 10.69VIGRR309 pKa = 11.84HH310 pKa = 4.38TPVTRR315 pKa = 11.84QAFVEE320 pKa = 5.42FYY322 pKa = 10.23RR323 pKa = 11.84GRR325 pKa = 11.84KK326 pKa = 6.22RR327 pKa = 11.84TIYY330 pKa = 9.69EE331 pKa = 3.93KK332 pKa = 10.72AVEE335 pKa = 4.36SLSAAPVTHH344 pKa = 7.16RR345 pKa = 11.84DD346 pKa = 3.17ARR348 pKa = 11.84LKK350 pKa = 10.3TFVKK354 pKa = 10.53AEE356 pKa = 3.98KK357 pKa = 10.25LVLSRR362 pKa = 11.84KK363 pKa = 9.02PDD365 pKa = 3.85PAPRR369 pKa = 11.84IIQPRR374 pKa = 11.84APRR377 pKa = 11.84YY378 pKa = 8.48NVEE381 pKa = 3.83LGVYY385 pKa = 9.83LRR387 pKa = 11.84PFEE390 pKa = 4.91HH391 pKa = 6.62KK392 pKa = 10.34AFRR395 pKa = 11.84AVEE398 pKa = 4.16RR399 pKa = 11.84VFGSPTIMKK408 pKa = 10.07GYY410 pKa = 7.65TAEE413 pKa = 4.13EE414 pKa = 3.87QASIARR420 pKa = 11.84EE421 pKa = 3.49KK422 pKa = 9.94WDD424 pKa = 3.65RR425 pKa = 11.84FSKK428 pKa = 10.42PVAIGLDD435 pKa = 3.26ASRR438 pKa = 11.84FDD440 pKa = 3.42QHH442 pKa = 8.35VSVAALKK449 pKa = 9.67WEE451 pKa = 4.21HH452 pKa = 6.55KK453 pKa = 10.07LYY455 pKa = 10.78HH456 pKa = 6.4HH457 pKa = 7.42AFNHH461 pKa = 6.58DD462 pKa = 3.36KK463 pKa = 10.22TLKK466 pKa = 10.64KK467 pKa = 10.04LLKK470 pKa = 9.06WQIHH474 pKa = 5.14NEE476 pKa = 3.9GTAFASDD483 pKa = 3.43GCIKK487 pKa = 10.48YY488 pKa = 10.38KK489 pKa = 9.74KK490 pKa = 8.03TGCRR494 pKa = 11.84MSGDD498 pKa = 3.79MNTSLGNCLIMCGMVYY514 pKa = 10.81DD515 pKa = 4.86LLVTHH520 pKa = 7.55DD521 pKa = 4.55IDD523 pKa = 6.31AEE525 pKa = 4.19LLNNGDD531 pKa = 4.17DD532 pKa = 3.85CVLICEE538 pKa = 4.46RR539 pKa = 11.84SEE541 pKa = 3.9EE542 pKa = 3.99AHH544 pKa = 6.44LLEE547 pKa = 5.83VIPQYY552 pKa = 10.48FRR554 pKa = 11.84QYY556 pKa = 9.4GFTMEE561 pKa = 4.15VEE563 pKa = 4.34KK564 pKa = 10.42PVHH567 pKa = 6.33IFEE570 pKa = 4.97KK571 pKa = 11.15LEE573 pKa = 3.99FCQTQPVYY581 pKa = 11.36VDD583 pKa = 3.83GKK585 pKa = 8.93WIMVRR590 pKa = 11.84KK591 pKa = 8.97PNPAMSKK598 pKa = 10.73DD599 pKa = 3.92LTCLLPIQNEE609 pKa = 4.31NNFKK613 pKa = 9.82EE614 pKa = 4.27WLSAVSEE621 pKa = 4.44CGLALTGGVPLWQNFYY637 pKa = 9.82QACNLGAARR646 pKa = 11.84TGFTKK651 pKa = 10.49SGLFTEE657 pKa = 4.98SGLAYY662 pKa = 10.23ASRR665 pKa = 11.84GLHH668 pKa = 5.58RR669 pKa = 11.84RR670 pKa = 11.84FSEE673 pKa = 4.14PSAEE677 pKa = 4.24TRR679 pKa = 11.84HH680 pKa = 5.3SFYY683 pKa = 10.76LAFGITPDD691 pKa = 3.7LQLALEE697 pKa = 4.78KK698 pKa = 10.75EE699 pKa = 4.31LDD701 pKa = 3.79SKK703 pKa = 11.32IMNEE707 pKa = 3.32WTMIPRR713 pKa = 11.84DD714 pKa = 3.61TRR716 pKa = 11.84QRR718 pKa = 11.84TYY720 pKa = 11.12YY721 pKa = 9.55STISNEE727 pKa = 3.97LTT729 pKa = 3.32

Molecular weight: 82.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1405

58

729

281.0

31.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.473 ± 0.932

1.637 ± 0.398

3.63 ± 0.291

5.694 ± 1.314

4.626 ± 0.293

7.758 ± 0.787

2.206 ± 0.36

4.555 ± 0.709

5.338 ± 0.94

7.829 ± 0.896

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.993 ± 0.504

5.125 ± 1.551

4.555 ± 0.536

4.342 ± 0.851

6.406 ± 0.926

7.331 ± 0.936

7.829 ± 1.565

7.26 ± 0.624

1.139 ± 0.184

3.203 ± 0.22
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski