Streptococcus phage Javan306

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 51 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6AZ04|A0A4D6AZ04_9CAUD Uncharacterized protein OS=Streptococcus phage Javan306 OX=2548099 GN=Javan306_0031 PE=4 SV=1
MM1 pKa = 8.1AYY3 pKa = 10.01QVIRR7 pKa = 11.84PFKK10 pKa = 10.32DD11 pKa = 3.11LRR13 pKa = 11.84DD14 pKa = 3.88PQQYY18 pKa = 9.81EE19 pKa = 4.0YY20 pKa = 10.82QIGDD24 pKa = 3.73IYY26 pKa = 10.67PRR28 pKa = 11.84TGYY31 pKa = 10.16RR32 pKa = 11.84SSKK35 pKa = 11.04AFIQEE40 pKa = 4.26LLDD43 pKa = 3.99GSNSAGSIFLTKK55 pKa = 9.68IDD57 pKa = 5.11DD58 pKa = 4.18DD59 pKa = 5.27DD60 pKa = 4.75ISEE63 pKa = 4.8GEE65 pKa = 4.56AEE67 pKa = 4.17TQEE70 pKa = 4.19PEE72 pKa = 4.38EE73 pKa = 4.37EE74 pKa = 4.22DD75 pKa = 3.69EE76 pKa = 4.32EE77 pKa = 4.47

Molecular weight: 8.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6AYF4|A0A4D6AYF4_9CAUD Uncharacterized protein OS=Streptococcus phage Javan306 OX=2548099 GN=Javan306_0032 PE=4 SV=1
MM1 pKa = 7.02YY2 pKa = 9.35NKK4 pKa = 9.94PVRR7 pKa = 11.84QSLKK11 pKa = 7.46TRR13 pKa = 11.84KK14 pKa = 8.55WYY16 pKa = 10.4KK17 pKa = 10.33FRR19 pKa = 11.84DD20 pKa = 3.52KK21 pKa = 11.37VMRR24 pKa = 11.84QYY26 pKa = 11.62DD27 pKa = 4.06YY28 pKa = 11.6LCQEE32 pKa = 4.33SLRR35 pKa = 11.84YY36 pKa = 8.47GQSVPAEE43 pKa = 4.42MVHH46 pKa = 6.75HH47 pKa = 7.39IYY49 pKa = 10.05PVSEE53 pKa = 4.23YY54 pKa = 10.47PEE56 pKa = 4.33LEE58 pKa = 4.17YY59 pKa = 11.24VSWNCLPLTNRR70 pKa = 11.84KK71 pKa = 9.47HH72 pKa = 5.18NTFHH76 pKa = 7.57DD77 pKa = 3.98RR78 pKa = 11.84NNDD81 pKa = 3.69KK82 pKa = 10.87IIGNGIYY89 pKa = 8.6WQKK92 pKa = 10.66KK93 pKa = 6.62RR94 pKa = 11.84KK95 pKa = 9.72KK96 pKa = 10.15EE97 pKa = 3.57FLTFFKK103 pKa = 11.02NKK105 pKa = 9.59NEE107 pKa = 4.11KK108 pKa = 10.16

Molecular weight: 13.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

51

0

51

9837

48

1393

192.9

21.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.821 ± 0.528

0.6 ± 0.126

5.967 ± 0.362

8.478 ± 0.43

4.381 ± 0.373

6.313 ± 0.374

1.372 ± 0.194

6.994 ± 0.245

8.57 ± 0.391

8.346 ± 0.373

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.541 ± 0.2

5.581 ± 0.28

2.765 ± 0.23

3.904 ± 0.251

4.422 ± 0.442

5.977 ± 0.465

5.611 ± 0.415

6.069 ± 0.293

1.454 ± 0.173

3.832 ± 0.392
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski