Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970) (CCHFV)
Average proteome isoelectric point is 6.74
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>sp|Q8JSZ3|GP_CCHFI Envelopment polyprotein OS=Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970) OX=652961 GN=GP PE=1 SV=1
MM1 pKa = 7.57 HH2 pKa = 7.6 ISLMYY7 pKa = 10.69 AILCLQLCGLGEE19 pKa = 4.23 THH21 pKa = 7.13 GSHH24 pKa = 6.97 NEE26 pKa = 3.67 TRR28 pKa = 11.84 HH29 pKa = 5.46 NKK31 pKa = 7.96 TDD33 pKa = 3.19 TMTTPGDD40 pKa = 3.9 NPSSEE45 pKa = 4.55 PPVSTALSITLDD57 pKa = 3.78 PSTVTPTTPASGLEE71 pKa = 4.25 GSGEE75 pKa = 4.67 VYY77 pKa = 10.3 TSPPITTGSLPLSEE91 pKa = 4.77 TTPEE95 pKa = 4.16 LPVTTGTDD103 pKa = 3.14 TLSAGDD109 pKa = 4.41 VDD111 pKa = 5.53 PSTQTAGGTSAPTVRR126 pKa = 11.84 TSLPNSPSTPSTPQDD141 pKa = 2.88 THH143 pKa = 7.73 HH144 pKa = 7.12 PVRR147 pKa = 11.84 NLLSVTSPGPDD158 pKa = 3.06 EE159 pKa = 4.34 TSTPSGTGKK168 pKa = 10.28 EE169 pKa = 4.31 SSATSSPHH177 pKa = 5.69 PVSNRR182 pKa = 11.84 PPTPPATAQGPTEE195 pKa = 4.2 NDD197 pKa = 2.79 SHH199 pKa = 6.62 NATEE203 pKa = 4.54 HH204 pKa = 6.75 PEE206 pKa = 4.04 SLTQSATPGLMTSPTQIVHH225 pKa = 6.12 PQSATPITVQDD236 pKa = 3.6 THH238 pKa = 7.11 PSPTNRR244 pKa = 11.84 SKK246 pKa = 11.3 RR247 pKa = 11.84 NLKK250 pKa = 9.43 MEE252 pKa = 5.4 IILTLSQGLKK262 pKa = 9.96 KK263 pKa = 10.84 YY264 pKa = 9.74 YY265 pKa = 10.85 GKK267 pKa = 10.03 ILRR270 pKa = 11.84 LLQLTLEE277 pKa = 4.49 EE278 pKa = 4.32 DD279 pKa = 3.97 TEE281 pKa = 5.85 GLLEE285 pKa = 3.92 WCKK288 pKa = 10.92 RR289 pKa = 11.84 NLGLDD294 pKa = 3.49 CDD296 pKa = 3.88 DD297 pKa = 4.45 TFFQKK302 pKa = 10.48 RR303 pKa = 11.84 IEE305 pKa = 4.14 EE306 pKa = 4.03 FFITGEE312 pKa = 3.99 GHH314 pKa = 6.27 FNEE317 pKa = 4.43 VLQFRR322 pKa = 11.84 TPGTLSTTEE331 pKa = 4.03 STPAGLPTAEE341 pKa = 4.2 PFKK344 pKa = 11.25 SYY346 pKa = 9.76 FAKK349 pKa = 10.71 GFLSIDD355 pKa = 3.11 SGYY358 pKa = 11.25 YY359 pKa = 9.14 SAKK362 pKa = 10.11 CYY364 pKa = 10.69 SGTSNSGLQLINITRR379 pKa = 11.84 HH380 pKa = 3.69 STRR383 pKa = 11.84 IVDD386 pKa = 3.78 TPGPKK391 pKa = 8.36 ITNLKK396 pKa = 8.95 TINCINLKK404 pKa = 10.51 ASIFKK409 pKa = 8.73 EE410 pKa = 3.8 HH411 pKa = 7.17 RR412 pKa = 11.84 EE413 pKa = 3.9 VEE415 pKa = 4.36 INVLLPQVAVNLSNCHH431 pKa = 4.8 VVIKK435 pKa = 10.33 SHH437 pKa = 5.66 VCDD440 pKa = 3.72 YY441 pKa = 11.57 SLDD444 pKa = 3.28 IDD446 pKa = 4.13 GAVRR450 pKa = 11.84 LPHH453 pKa = 6.95 IYY455 pKa = 10.2 HH456 pKa = 6.86 EE457 pKa = 5.01 GVFIPGTYY465 pKa = 9.93 KK466 pKa = 10.32 IVIDD470 pKa = 4.78 KK471 pKa = 10.73 KK472 pKa = 10.58 NKK474 pKa = 10.24 LNDD477 pKa = 3.38 RR478 pKa = 11.84 CTLFTDD484 pKa = 4.46 CVIKK488 pKa = 10.68 GRR490 pKa = 11.84 EE491 pKa = 3.89 VRR493 pKa = 11.84 KK494 pKa = 9.13 GQSVLRR500 pKa = 11.84 QYY502 pKa = 9.37 KK503 pKa = 8.38 TEE505 pKa = 3.6 IRR507 pKa = 11.84 IGKK510 pKa = 9.66 ASTGSRR516 pKa = 11.84 RR517 pKa = 11.84 LLSEE521 pKa = 4.6 EE522 pKa = 4.67 PSDD525 pKa = 4.1 DD526 pKa = 4.31 CISRR530 pKa = 11.84 TQLLRR535 pKa = 11.84 TEE537 pKa = 4.14 TAEE540 pKa = 3.81 IHH542 pKa = 6.1 GDD544 pKa = 3.43 NYY546 pKa = 10.95 GGPGDD551 pKa = 5.55 KK552 pKa = 9.4 ITICNGSTIVDD563 pKa = 3.39 QRR565 pKa = 11.84 LGSEE569 pKa = 4.37 LGCYY573 pKa = 8.48 TINRR577 pKa = 11.84 VRR579 pKa = 11.84 SFKK582 pKa = 10.74 LCEE585 pKa = 3.7 NSATGKK591 pKa = 9.8 NCEE594 pKa = 4.05 IDD596 pKa = 3.91 SVPVKK601 pKa = 10.42 CRR603 pKa = 11.84 QGYY606 pKa = 7.83 CLRR609 pKa = 11.84 ITQEE613 pKa = 3.7 GRR615 pKa = 11.84 GHH617 pKa = 5.81 VKK619 pKa = 10.52 LSRR622 pKa = 11.84 GSEE625 pKa = 4.26 VVLDD629 pKa = 4.32 ACDD632 pKa = 3.66 TSCEE636 pKa = 3.72 IMIPKK641 pKa = 8.49 GTGDD645 pKa = 3.54 ILVDD649 pKa = 3.59 CSGGQQHH656 pKa = 6.25 FLKK659 pKa = 10.96 DD660 pKa = 3.45 NLIDD664 pKa = 4.26 LGCPKK669 pKa = 10.17 IPLLGKK675 pKa = 8.68 MAIYY679 pKa = 9.27 ICRR682 pKa = 11.84 MSNHH686 pKa = 7.17 PKK688 pKa = 7.76 TTMAFLFWFSFGYY701 pKa = 10.71 VITCILCKK709 pKa = 10.42 AIFYY713 pKa = 10.41 LLIIVGTLGKK723 pKa = 10.15 RR724 pKa = 11.84 LKK726 pKa = 10.24 QYY728 pKa = 10.99 RR729 pKa = 11.84 EE730 pKa = 4.51 LKK732 pKa = 10.09 PQTCTICEE740 pKa = 4.31 TTPVNAIDD748 pKa = 5.8 AEE750 pKa = 4.33 MHH752 pKa = 6.94 DD753 pKa = 5.16 LNCSYY758 pKa = 10.8 NICPYY763 pKa = 9.89 CASRR767 pKa = 11.84 LTSDD771 pKa = 3.22 GLARR775 pKa = 11.84 HH776 pKa = 6.54 VIQCPKK782 pKa = 10.08 RR783 pKa = 11.84 KK784 pKa = 9.5 EE785 pKa = 4.17 KK786 pKa = 11.17 VEE788 pKa = 3.94 EE789 pKa = 4.14 TEE791 pKa = 5.09 LYY793 pKa = 10.93 LNLEE797 pKa = 4.78 RR798 pKa = 11.84 IPWVVRR804 pKa = 11.84 KK805 pKa = 9.46 LLQVSEE811 pKa = 4.48 STGVALKK818 pKa = 10.37 RR819 pKa = 11.84 SSWLIVLLVLFTVSLSPVQSAPIGQGKK846 pKa = 7.84 TIEE849 pKa = 4.25 AYY851 pKa = 9.9 RR852 pKa = 11.84 ARR854 pKa = 11.84 EE855 pKa = 4.61 GYY857 pKa = 9.05 TSICLFVLGSILFIVSCLMKK877 pKa = 10.83 GLVDD881 pKa = 3.72 SVGNSFFPGLSICKK895 pKa = 8.08 TCSISSINGFEE906 pKa = 4.15 IEE908 pKa = 4.26 SHH910 pKa = 5.99 KK911 pKa = 10.76 CYY913 pKa = 10.36 CSLFCCPYY921 pKa = 10.1 CRR923 pKa = 11.84 HH924 pKa = 6.54 CSTDD928 pKa = 3.5 KK929 pKa = 10.8 EE930 pKa = 4.17 IHH932 pKa = 6.39 KK933 pKa = 10.28 LHH935 pKa = 7.1 LSICKK940 pKa = 9.65 KK941 pKa = 9.91 RR942 pKa = 11.84 KK943 pKa = 9.05 KK944 pKa = 10.38 GSNVMLAVCKK954 pKa = 10.15 LMCFRR959 pKa = 11.84 ATMEE963 pKa = 3.88 VSNRR967 pKa = 11.84 ALFIRR972 pKa = 11.84 SIINTTFVLCILILAVCVVSTSAVEE997 pKa = 4.21 MEE999 pKa = 4.55 NLPAGTWEE1007 pKa = 4.25 RR1008 pKa = 11.84 EE1009 pKa = 3.44 EE1010 pKa = 5.16 DD1011 pKa = 3.49 LTNFCHH1017 pKa = 6.99 QEE1019 pKa = 4.06 CQVTEE1024 pKa = 4.32 TEE1026 pKa = 4.39 CLCPYY1031 pKa = 9.2 EE1032 pKa = 4.69 ALVLRR1037 pKa = 11.84 KK1038 pKa = 9.11 PLFLDD1043 pKa = 3.65 STAKK1047 pKa = 10.34 GMKK1050 pKa = 9.79 NLLNSTSLEE1059 pKa = 4.0 TSLSIEE1065 pKa = 4.44 APWGAINVQSTYY1077 pKa = 10.95 KK1078 pKa = 9.46 PTVSTANIALSWSSVEE1094 pKa = 3.85 HH1095 pKa = 6.69 RR1096 pKa = 11.84 GNKK1099 pKa = 9.27 ILVSGRR1105 pKa = 11.84 SEE1107 pKa = 4.73 SIMKK1111 pKa = 10.41 LEE1113 pKa = 3.97 EE1114 pKa = 3.85 RR1115 pKa = 11.84 TGISWDD1121 pKa = 3.84 LGVEE1125 pKa = 4.13 DD1126 pKa = 4.85 ASEE1129 pKa = 4.31 SKK1131 pKa = 10.9 LLTVSVMDD1139 pKa = 4.3 LSQMYY1144 pKa = 10.35 SPVFEE1149 pKa = 4.36 YY1150 pKa = 10.94 LSGDD1154 pKa = 3.66 RR1155 pKa = 11.84 QVGEE1159 pKa = 4.19 WPKK1162 pKa = 9.96 ATCTGDD1168 pKa = 3.32 CPEE1171 pKa = 4.51 RR1172 pKa = 11.84 CGCTSSTCLHH1182 pKa = 6.53 KK1183 pKa = 10.5 EE1184 pKa = 3.88 WPHH1187 pKa = 5.34 SRR1189 pKa = 11.84 NWRR1192 pKa = 11.84 CNPTWCWGVGTGCTCCGLDD1211 pKa = 4.15 VKK1213 pKa = 11.17 DD1214 pKa = 5.11 LFTDD1218 pKa = 3.48 YY1219 pKa = 10.87 MFVKK1223 pKa = 10.23 WKK1225 pKa = 10.39 VEE1227 pKa = 4.15 YY1228 pKa = 10.15 IKK1230 pKa = 10.12 TEE1232 pKa = 4.4 AIVCVEE1238 pKa = 4.09 LTSQEE1243 pKa = 4.24 RR1244 pKa = 11.84 QCSLIEE1250 pKa = 4.15 AGTRR1254 pKa = 11.84 FNLGPVTITLSEE1266 pKa = 4.08 PRR1268 pKa = 11.84 NIQQKK1273 pKa = 10.1 LPPEE1277 pKa = 5.18 IITLHH1282 pKa = 5.77 PRR1284 pKa = 11.84 IEE1286 pKa = 4.17 EE1287 pKa = 4.26 GFFDD1291 pKa = 4.31 LMHH1294 pKa = 5.39 VQKK1297 pKa = 10.66 VLSASTVCKK1306 pKa = 10.29 LQSCTHH1312 pKa = 6.41 GVPGDD1317 pKa = 3.56 LQVYY1321 pKa = 10.12 HH1322 pKa = 7.16 IGNLLKK1328 pKa = 10.12 GDD1330 pKa = 3.99 KK1331 pKa = 11.03 VNGHH1335 pKa = 7.8 LIHH1338 pKa = 7.27 KK1339 pKa = 9.78 IEE1341 pKa = 4.02 PHH1343 pKa = 6.59 FNTSWMSWDD1352 pKa = 3.69 GCDD1355 pKa = 4.67 LDD1357 pKa = 5.18 YY1358 pKa = 10.77 YY1359 pKa = 11.18 CNMGDD1364 pKa = 3.9 WPSCTYY1370 pKa = 10.54 TGVTQHH1376 pKa = 5.65 NHH1378 pKa = 4.59 ASFVNLLNIEE1388 pKa = 3.91 TDD1390 pKa = 3.53 YY1391 pKa = 11.39 TKK1393 pKa = 10.99 NFHH1396 pKa = 5.91 FHH1398 pKa = 6.05 SKK1400 pKa = 9.82 RR1401 pKa = 11.84 VTAHH1405 pKa = 6.96 GDD1407 pKa = 3.46 TPQLDD1412 pKa = 3.89 LKK1414 pKa = 11.05 ARR1416 pKa = 11.84 PTYY1419 pKa = 10.09 GAGEE1423 pKa = 3.97 ITVLVEE1429 pKa = 3.85 VADD1432 pKa = 4.23 MEE1434 pKa = 4.57 LHH1436 pKa = 5.51 TKK1438 pKa = 10.14 KK1439 pKa = 10.37 IEE1441 pKa = 3.75 ISGLKK1446 pKa = 9.42 FASLACTGCYY1456 pKa = 9.88 ACSSGISCKK1465 pKa = 10.1 VRR1467 pKa = 11.84 IHH1469 pKa = 7.01 VDD1471 pKa = 3.27 EE1472 pKa = 5.16 PDD1474 pKa = 3.3 EE1475 pKa = 4.12 LTVHH1479 pKa = 6.18 VKK1481 pKa = 10.51 SDD1483 pKa = 3.8 DD1484 pKa = 3.91 PDD1486 pKa = 3.58 VVAASSSLMARR1497 pKa = 11.84 KK1498 pKa = 9.96 LEE1500 pKa = 4.28 FGTDD1504 pKa = 3.28 STFKK1508 pKa = 10.78 AFSAMPKK1515 pKa = 9.55 TSLCFYY1521 pKa = 9.63 IVEE1524 pKa = 4.26 RR1525 pKa = 11.84 EE1526 pKa = 4.14 HH1527 pKa = 7.14 CKK1529 pKa = 10.45 SCSEE1533 pKa = 4.19 EE1534 pKa = 4.02 DD1535 pKa = 3.25 TKK1537 pKa = 11.58 KK1538 pKa = 10.76 CVNTKK1543 pKa = 10.45 LEE1545 pKa = 4.13 QPQSILIEE1553 pKa = 4.15 HH1554 pKa = 7.26 KK1555 pKa = 9.71 GTIIGKK1561 pKa = 8.99 QNSTCTAKK1569 pKa = 10.64 ASCWLEE1575 pKa = 3.93 SVKK1578 pKa = 11.0 SFFYY1582 pKa = 10.73 GLKK1585 pKa = 10.61 NMLSGIFGNVFMGIFLFLAPFILLILFFMFGWRR1618 pKa = 11.84 ILFCFKK1624 pKa = 10.05 CCRR1627 pKa = 11.84 RR1628 pKa = 11.84 TRR1630 pKa = 11.84 GLFKK1634 pKa = 10.65 YY1635 pKa = 10.11 RR1636 pKa = 11.84 HH1637 pKa = 6.01 LKK1639 pKa = 10.46 DD1640 pKa = 4.44 DD1641 pKa = 3.72 EE1642 pKa = 4.22 EE1643 pKa = 4.17 TGYY1646 pKa = 10.9 RR1647 pKa = 11.84 RR1648 pKa = 11.84 IIEE1651 pKa = 4.03 KK1652 pKa = 10.75 LNNKK1656 pKa = 8.89 KK1657 pKa = 10.48 GKK1659 pKa = 9.99 NKK1661 pKa = 10.26 LLDD1664 pKa = 3.64 GEE1666 pKa = 4.44 RR1667 pKa = 11.84 LADD1670 pKa = 3.78 RR1671 pKa = 11.84 RR1672 pKa = 11.84 IAEE1675 pKa = 4.21 LFSTKK1680 pKa = 7.31 THH1682 pKa = 6.46 IGG1684 pKa = 3.3
Molecular weight: 186.59 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 6.49
IPC2_protein 6.649
IPC_protein 6.547
Toseland 6.478
ProMoST 7.117
Dawson 7.102
Bjellqvist 7.395
Wikipedia 7.059
Rodwell 7.117
Grimsley 6.547
Solomon 7.117
Lehninger 7.132
Nozaki 7.746
DTASelect 7.424
Thurlkill 7.468
EMBOSS 7.424
Sillero 7.644
Patrickios 3.872
IPC_peptide 7.117
IPC2_peptide 7.132
IPC2.peptide.svr19 6.897
Protein with the highest isoelectric point:
>sp|Q6TQR6|L_CCHFI RNA-directed RNA polymerase L OS=Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970) OX=652961 GN=L PE=1 SV=2
MM1 pKa = 7.37 EE2 pKa = 5.21 NKK4 pKa = 9.92 IEE6 pKa = 4.12 VNNKK10 pKa = 10.24 DD11 pKa = 3.26 EE12 pKa = 4.19 MNRR15 pKa = 11.84 WFEE18 pKa = 4.04 EE19 pKa = 4.28 FKK21 pKa = 10.89 KK22 pKa = 11.23 GNGLVDD28 pKa = 4.02 TFTNSYY34 pKa = 9.74 SFCEE38 pKa = 4.17 SVPNLDD44 pKa = 3.08 RR45 pKa = 11.84 FVFQMASATDD55 pKa = 3.9 DD56 pKa = 3.63 AQKK59 pKa = 11.29 DD60 pKa = 3.88 SIYY63 pKa = 11.16 ASALVEE69 pKa = 4.03 ATKK72 pKa = 10.54 FCAPIYY78 pKa = 8.27 EE79 pKa = 4.62 CAWVSSTGIVKK90 pKa = 10.41 KK91 pKa = 10.38 GLEE94 pKa = 4.12 WFEE97 pKa = 4.62 KK98 pKa = 10.21 NAGTIKK104 pKa = 10.31 SWDD107 pKa = 3.34 EE108 pKa = 4.2 SYY110 pKa = 10.95 TEE112 pKa = 4.62 LKK114 pKa = 10.66 VDD116 pKa = 3.58 VPKK119 pKa = 10.47 IEE121 pKa = 4.08 QLTGYY126 pKa = 9.0 QQAALKK132 pKa = 8.35 WRR134 pKa = 11.84 KK135 pKa = 10.11 DD136 pKa = 2.81 IGFRR140 pKa = 11.84 VNANTAALSNKK151 pKa = 8.73 VLAEE155 pKa = 3.85 YY156 pKa = 9.94 KK157 pKa = 10.43 VPGEE161 pKa = 3.7 IVMSVKK167 pKa = 10.47 EE168 pKa = 4.32 MLSDD172 pKa = 3.71 MIRR175 pKa = 11.84 RR176 pKa = 11.84 RR177 pKa = 11.84 NLILNRR183 pKa = 11.84 GGDD186 pKa = 3.89 EE187 pKa = 4.11 NPRR190 pKa = 11.84 GPVSHH195 pKa = 6.54 EE196 pKa = 3.72 HH197 pKa = 6.3 VDD199 pKa = 3.04 WCRR202 pKa = 11.84 EE203 pKa = 3.93 FVKK206 pKa = 10.55 GKK208 pKa = 10.74 YY209 pKa = 9.71 IMAFNPPWGDD219 pKa = 2.94 INKK222 pKa = 9.96 SGRR225 pKa = 11.84 SGIALVATGLAKK237 pKa = 10.52 LAEE240 pKa = 4.36 TEE242 pKa = 4.17 GKK244 pKa = 10.88 GIFDD248 pKa = 3.72 EE249 pKa = 4.49 AKK251 pKa = 9.15 KK252 pKa = 8.93 TVEE255 pKa = 4.14 ALNGYY260 pKa = 8.91 LDD262 pKa = 3.51 KK263 pKa = 11.45 HH264 pKa = 7.28 KK265 pKa = 11.23 DD266 pKa = 3.49 EE267 pKa = 4.59 VDD269 pKa = 3.27 RR270 pKa = 11.84 ASADD274 pKa = 3.51 SMITNLLKK282 pKa = 10.7 HH283 pKa = 5.78 IAKK286 pKa = 10.09 AQEE289 pKa = 4.04 LYY291 pKa = 10.76 KK292 pKa = 10.97 NSSALRR298 pKa = 11.84 AQSAQIDD305 pKa = 4.09 TAFSSYY311 pKa = 9.79 YY312 pKa = 8.44 WLYY315 pKa = 10.2 KK316 pKa = 10.7 AGVTPEE322 pKa = 4.05 TFPTVSQFLFEE333 pKa = 5.15 LGKK336 pKa = 10.1 QPRR339 pKa = 11.84 GTKK342 pKa = 9.88 KK343 pKa = 9.34 MKK345 pKa = 10.11 KK346 pKa = 9.65 ALLSTPMKK354 pKa = 9.37 WGKK357 pKa = 10.08 KK358 pKa = 9.13 LYY360 pKa = 10.41 EE361 pKa = 4.35 LFADD365 pKa = 5.93 DD366 pKa = 5.64 SFQQNRR372 pKa = 11.84 IYY374 pKa = 9.43 MHH376 pKa = 6.84 PAVLTAGRR384 pKa = 11.84 ISEE387 pKa = 4.14 MGVCFGTIPVANPDD401 pKa = 3.76 DD402 pKa = 4.06 AAQGSGHH409 pKa = 6.01 TKK411 pKa = 10.35 SILNLRR417 pKa = 11.84 TNTEE421 pKa = 4.21 TNNPCAKK428 pKa = 9.85 TIVKK432 pKa = 10.01 LFEE435 pKa = 4.02 VQKK438 pKa = 9.89 TGFNIQDD445 pKa = 3.36 MDD447 pKa = 3.69 IVASEE452 pKa = 4.34 HH453 pKa = 6.72 LLHH456 pKa = 6.59 QSLVGKK462 pKa = 9.72 QSPFQNAYY470 pKa = 8.7 NVKK473 pKa = 10.46 GNATSANIII482 pKa = 3.84
Molecular weight: 53.89 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 7.161
IPC2_protein 7.614
IPC_protein 7.512
Toseland 7.366
ProMoST 8.068
Dawson 8.302
Bjellqvist 8.463
Wikipedia 8.244
Rodwell 8.346
Grimsley 7.38
Solomon 8.404
Lehninger 8.404
Nozaki 8.668
DTASelect 8.302
Thurlkill 8.39
EMBOSS 8.507
Sillero 8.653
Patrickios 4.584
IPC_peptide 8.39
IPC2_peptide 7.249
IPC2.peptide.svr19 7.673
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
3
0
3
6111
482
3945
2037.0
229.44
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
4.615 ± 1.122
2.995 ± 0.853
5.106 ± 0.423
6.824 ± 0.296
4.058 ± 0.249
5.236 ± 0.859
2.307 ± 0.354
5.989 ± 0.231
7.266 ± 0.664
11.193 ± 1.369
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.127 ± 0.221
4.893 ± 0.571
3.551 ± 0.746
3.42 ± 0.352
4.811 ± 0.429
9.18 ± 0.66
6.758 ± 1.04
6.055 ± 0.087
1.064 ± 0.222
2.553 ± 0.149
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here