Perch rhabdovirus (isolate Perch/France/PRV/1981)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Perhabdovirus; Egli virus

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K7X6R3|K7X6R3_PRVF Matrix protein OS=Perch rhabdovirus (isolate Perch/France/PRV/1981) OX=1559359 GN=M PE=4 SV=1
MM1 pKa = 7.93DD2 pKa = 5.15AGAIVVRR9 pKa = 11.84STKK12 pKa = 10.68ASFVPLQPQLEE23 pKa = 4.27DD24 pKa = 4.16EE25 pKa = 4.49INYY28 pKa = 9.24PADD31 pKa = 3.34FFVNQKK37 pKa = 9.32IPTFVRR43 pKa = 11.84YY44 pKa = 9.43YY45 pKa = 10.87EE46 pKa = 4.01NAKK49 pKa = 10.68PEE51 pKa = 4.54DD52 pKa = 3.99LLGMIFGEE60 pKa = 4.38LSEE63 pKa = 4.5SRR65 pKa = 11.84LPSEE69 pKa = 5.05LVTSYY74 pKa = 10.33IYY76 pKa = 11.15SVMSKK81 pKa = 7.22WTEE84 pKa = 3.82TLDD87 pKa = 4.43APWEE91 pKa = 4.22SFGIEE96 pKa = 3.94FGDD99 pKa = 3.86VNDD102 pKa = 3.68ILTPFSLLKK111 pKa = 10.83CIVSDD116 pKa = 4.89QALADD121 pKa = 3.98YY122 pKa = 8.23KK123 pKa = 10.48TVAVPGDD130 pKa = 3.65IDD132 pKa = 5.05PIAMMIFLLAPYY144 pKa = 9.64RR145 pKa = 11.84IVGIQNEE152 pKa = 4.61EE153 pKa = 3.78YY154 pKa = 9.16QARR157 pKa = 11.84VIQTIQNQIDD167 pKa = 3.66SLGAKK172 pKa = 9.37RR173 pKa = 11.84LNVRR177 pKa = 11.84SLKK180 pKa = 10.89NITTLTRR187 pKa = 11.84SPNYY191 pKa = 9.72LKK193 pKa = 10.81LVAAIDD199 pKa = 3.28MFYY202 pKa = 11.09FHH204 pKa = 7.49FKK206 pKa = 10.44NSQEE210 pKa = 4.06RR211 pKa = 11.84AVVRR215 pKa = 11.84VATLGSRR222 pKa = 11.84HH223 pKa = 6.47KK224 pKa = 10.91DD225 pKa = 3.16CAALSTLNHH234 pKa = 6.08IVQFTGKK241 pKa = 9.39PLIEE245 pKa = 4.01VLDD248 pKa = 3.82WVFTDD253 pKa = 3.94QVAQEE258 pKa = 4.51VSRR261 pKa = 11.84MMRR264 pKa = 11.84PGQEE268 pKa = 3.22IDD270 pKa = 3.38QADD273 pKa = 3.8SYY275 pKa = 11.27MPYY278 pKa = 10.71LKK280 pKa = 10.68DD281 pKa = 4.11LGLCRR286 pKa = 11.84KK287 pKa = 9.59SPYY290 pKa = 9.96SSSANPGVHH299 pKa = 6.14CWAQMTCALLGSKK312 pKa = 10.24RR313 pKa = 11.84SQNAIASTEE322 pKa = 4.0EE323 pKa = 3.69NLVNLTRR330 pKa = 11.84NAEE333 pKa = 3.59IMAYY337 pKa = 10.19VLGTGAVLVKK347 pKa = 10.28ALEE350 pKa = 4.1IGGVKK355 pKa = 9.26GTDD358 pKa = 3.37PDD360 pKa = 5.57DD361 pKa = 3.37ITVDD365 pKa = 3.06VDD367 pKa = 3.82GAGEE371 pKa = 4.15PTTLEE376 pKa = 4.0ALDD379 pKa = 3.75WLDD382 pKa = 4.09FVQTNGCQLTPKK394 pKa = 9.12MEE396 pKa = 4.16AKK398 pKa = 9.84IRR400 pKa = 11.84VMSLRR405 pKa = 11.84IQNARR410 pKa = 11.84KK411 pKa = 8.73DD412 pKa = 3.73TIGAYY417 pKa = 10.33LKK419 pKa = 10.82GRR421 pKa = 11.84AVQNEE426 pKa = 3.91

Molecular weight: 47.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K7X7F6|K7X7F6_PRVF GDP polyribonucleotidyltransferase OS=Perch rhabdovirus (isolate Perch/France/PRV/1981) OX=1559359 GN=L PE=4 SV=1
MM1 pKa = 7.71ALNIFKK7 pKa = 10.82KK8 pKa = 10.06KK9 pKa = 10.24GKK11 pKa = 9.4SNKK14 pKa = 9.77EE15 pKa = 3.66MDD17 pKa = 3.61SGKK20 pKa = 10.63ALAMPSAPPVYY31 pKa = 10.31SEE33 pKa = 4.85APGPFDD39 pKa = 3.27AWNTSSIEE47 pKa = 4.03EE48 pKa = 4.12LSKK51 pKa = 11.08VSYY54 pKa = 10.78LVDD57 pKa = 3.19TCLSVTTKK65 pKa = 10.94GPLQSVADD73 pKa = 4.41AYY75 pKa = 10.33MVAQGMMDD83 pKa = 4.12YY84 pKa = 11.32YY85 pKa = 11.06NGPVLSKK92 pKa = 10.36PFFMTLFLGGVHH104 pKa = 6.77GMQASVRR111 pKa = 11.84GSQSIRR117 pKa = 11.84YY118 pKa = 7.89EE119 pKa = 4.23RR120 pKa = 11.84EE121 pKa = 3.23FHH123 pKa = 7.06GPMTFPYY130 pKa = 9.82HH131 pKa = 6.93KK132 pKa = 10.17SNPVDD137 pKa = 3.37WTPKK141 pKa = 9.6SVSVHH146 pKa = 4.49YY147 pKa = 9.69TSSLRR152 pKa = 11.84GKK154 pKa = 9.17AVEE157 pKa = 4.35VVFEE161 pKa = 4.43ARR163 pKa = 11.84LKK165 pKa = 9.6STRR168 pKa = 11.84QMGPSVWHH176 pKa = 6.09YY177 pKa = 11.64LDD179 pKa = 3.68GLKK182 pKa = 10.73GIQRR186 pKa = 11.84PGNEE190 pKa = 3.68AVLKK194 pKa = 10.1QFGVPTMMLGNNLVFNLDD212 pKa = 3.34VQMSDD217 pKa = 3.22LL218 pKa = 4.06

Molecular weight: 24.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3579

218

2097

715.8

81.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.393 ± 0.525

1.369 ± 0.3

5.644 ± 0.237

6.901 ± 0.45

4.135 ± 0.107

6.315 ± 0.461

2.431 ± 0.297

6.175 ± 0.599

6.566 ± 0.433

9.5 ± 0.604

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.822 ± 0.425

4.582 ± 0.171

4.806 ± 0.847

3.688 ± 0.231

5.225 ± 0.516

7.907 ± 0.357

5.728 ± 0.303

5.868 ± 0.805

2.012 ± 0.168

2.934 ± 0.268
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski