Garrulus glandarius associated circular virus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; unclassified Circoviridae

Average proteome isoelectric point is 7.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A218L3K4|A0A218L3K4_9CIRC Putative cap OS=Garrulus glandarius associated circular virus 1 OX=2006642 PE=4 SV=1
MM1 pKa = 7.02ATSVPTVPGKK11 pKa = 10.32LGKK14 pKa = 9.96SRR16 pKa = 11.84SCCWTLNNYY25 pKa = 9.78HH26 pKa = 7.57DD27 pKa = 5.34DD28 pKa = 4.49DD29 pKa = 5.54IIRR32 pKa = 11.84LRR34 pKa = 11.84HH35 pKa = 5.28YY36 pKa = 10.5GKK38 pKa = 10.1NSCRR42 pKa = 11.84YY43 pKa = 7.88MVFGYY48 pKa = 10.01EE49 pKa = 4.12VAPGTGTPHH58 pKa = 5.75LQGYY62 pKa = 7.21VSWEE66 pKa = 3.9NPRR69 pKa = 11.84SLDD72 pKa = 3.43AFKK75 pKa = 11.42LEE77 pKa = 3.87ISQRR81 pKa = 11.84LHH83 pKa = 6.67LEE85 pKa = 4.06KK86 pKa = 10.38TRR88 pKa = 11.84GTPKK92 pKa = 10.19QASDD96 pKa = 3.54YY97 pKa = 10.44CKK99 pKa = 10.37EE100 pKa = 4.0DD101 pKa = 3.13GKK103 pKa = 11.23FEE105 pKa = 4.28EE106 pKa = 5.08FGEE109 pKa = 4.3LPRR112 pKa = 11.84QGEE115 pKa = 4.17RR116 pKa = 11.84TDD118 pKa = 2.87WCVAISQIQSGIPVEE133 pKa = 4.29EE134 pKa = 4.52VIEE137 pKa = 4.09NQPQLLPCIRR147 pKa = 11.84ALDD150 pKa = 3.83TFKK153 pKa = 11.05ARR155 pKa = 11.84QIKK158 pKa = 8.91PLHH161 pKa = 6.39RR162 pKa = 11.84EE163 pKa = 3.72VTVYY167 pKa = 10.32VLWGDD172 pKa = 3.35AGTGKK177 pKa = 10.37SRR179 pKa = 11.84WAYY182 pKa = 10.6DD183 pKa = 3.63NYY185 pKa = 10.53PEE187 pKa = 5.67LYY189 pKa = 10.24SKK191 pKa = 10.83PPGKK195 pKa = 9.27WWDD198 pKa = 3.66GYY200 pKa = 11.04LGQKK204 pKa = 9.25TILLDD209 pKa = 3.63DD210 pKa = 4.56FYY212 pKa = 11.57GYY214 pKa = 10.1IPYY217 pKa = 9.39TEE219 pKa = 4.71LLNVLDD225 pKa = 5.04RR226 pKa = 11.84YY227 pKa = 9.9PYY229 pKa = 9.68HH230 pKa = 7.95AEE232 pKa = 3.92VKK234 pKa = 10.37NGYY237 pKa = 8.25VWAQWDD243 pKa = 4.04TVIITSNKK251 pKa = 9.1PPNLWYY257 pKa = 10.38KK258 pKa = 11.01GIGLTPALQRR268 pKa = 11.84RR269 pKa = 11.84LNKK272 pKa = 9.82ISFYY276 pKa = 11.02GIDD279 pKa = 3.9GKK281 pKa = 10.45IEE283 pKa = 4.23DD284 pKa = 4.48ASCPPEE290 pKa = 4.18AQSRR294 pKa = 11.84SAA296 pKa = 4.19

Molecular weight: 33.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A218L3K4|A0A218L3K4_9CIRC Putative cap OS=Garrulus glandarius associated circular virus 1 OX=2006642 PE=4 SV=1
MM1 pKa = 7.66AKK3 pKa = 10.16SKK5 pKa = 9.17MRR7 pKa = 11.84RR8 pKa = 11.84VPRR11 pKa = 11.84KK12 pKa = 9.23RR13 pKa = 11.84RR14 pKa = 11.84AGLRR18 pKa = 11.84KK19 pKa = 9.4RR20 pKa = 11.84RR21 pKa = 11.84VGKK24 pKa = 10.29ARR26 pKa = 11.84ASNVRR31 pKa = 11.84DD32 pKa = 3.74FASLSVSRR40 pKa = 11.84TFTVPGSPPTQPIANVMYY58 pKa = 11.31SMMATQLTQYY68 pKa = 9.11TRR70 pKa = 11.84AVQAAQAYY78 pKa = 8.29QYY80 pKa = 11.24YY81 pKa = 9.8RR82 pKa = 11.84IKK84 pKa = 10.62RR85 pKa = 11.84VSLKK89 pKa = 10.57LKK91 pKa = 9.88PQFDD95 pKa = 4.61TYY97 pKa = 11.43ASSANAYY104 pKa = 7.41GKK106 pKa = 9.74PKK108 pKa = 10.32LYY110 pKa = 10.89YY111 pKa = 10.08IIDD114 pKa = 3.64KK115 pKa = 11.05SGALPTNVSLEE126 pKa = 4.12SLKK129 pKa = 10.97QMGARR134 pKa = 11.84PRR136 pKa = 11.84NLDD139 pKa = 3.45EE140 pKa = 4.44KK141 pKa = 11.02ALTISFSPTVLNSAMTAGGGAFTTAPSQYY170 pKa = 10.74QVTPWLNTNANTVAPGVWTANDD192 pKa = 3.43VDD194 pKa = 4.41HH195 pKa = 7.15LGCYY199 pKa = 9.12WYY201 pKa = 10.95VEE203 pKa = 4.32STSYY207 pKa = 11.21GGTGGLPYY215 pKa = 10.44QVDD218 pKa = 3.66VEE220 pKa = 4.58VQFEE224 pKa = 4.36FKK226 pKa = 10.66KK227 pKa = 10.36PLWSALSSTTAIEE240 pKa = 4.15LVPAILDD247 pKa = 3.7ASPDD251 pKa = 3.77GVEE254 pKa = 4.59GGSDD258 pKa = 4.47GITIPLIHH266 pKa = 6.93

Molecular weight: 29.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

562

266

296

281.0

31.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.651 ± 1.889

1.423 ± 0.688

4.804 ± 0.686

4.448 ± 1.193

2.491 ± 0.092

7.651 ± 0.334

1.423 ± 0.441

4.804 ± 0.686

6.05 ± 0.27

8.007 ± 0.321

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.601 ± 0.677

3.737 ± 0.015

6.94 ± 0.113

4.448 ± 0.041

5.872 ± 0.094

7.295 ± 1.135

6.762 ± 0.991

6.228 ± 0.848

2.491 ± 0.649

5.872 ± 0.4
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski