Amino acid dipepetide frequency for Beet mild curly top virus - [Worland]

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.191AlaAla: 4.191 ± 3.251
0.0AlaCys: 0.0 ± 0.0
0.838AlaAsp: 0.838 ± 0.65
2.515AlaGlu: 2.515 ± 1.361
0.838AlaPhe: 0.838 ± 0.955
1.676AlaGly: 1.676 ± 0.765
0.0AlaHis: 0.0 ± 0.0
1.676AlaIle: 1.676 ± 1.054
1.676AlaLys: 1.676 ± 1.3
7.544AlaLeu: 7.544 ± 2.494
1.676AlaMet: 1.676 ± 1.134
1.676AlaAsn: 1.676 ± 0.765
1.676AlaPro: 1.676 ± 1.169
3.353AlaGln: 3.353 ± 1.912
2.515AlaArg: 2.515 ± 1.95
2.515AlaSer: 2.515 ± 1.406
2.515AlaThr: 2.515 ± 1.337
0.838AlaVal: 0.838 ± 0.955
0.838AlaTrp: 0.838 ± 0.762
0.838AlaTyr: 0.838 ± 0.65
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.838CysAsp: 0.838 ± 0.955
0.0CysGlu: 0.0 ± 0.0
0.838CysPhe: 0.838 ± 0.955
0.0CysGly: 0.0 ± 0.0
1.676CysHis: 1.676 ± 1.697
1.676CysIle: 1.676 ± 1.445
1.676CysLys: 1.676 ± 1.147
1.676CysLeu: 1.676 ± 1.343
0.0CysMet: 0.0 ± 0.0
0.838CysAsn: 0.838 ± 0.65
0.838CysPro: 0.838 ± 0.65
0.0CysGln: 0.0 ± 0.0
0.838CysArg: 0.838 ± 0.762
1.676CysSer: 1.676 ± 0.979
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.838CysTrp: 0.838 ± 1.015
0.838CysTyr: 0.838 ± 0.762
0.0CysXaa: 0.0 ± 0.0
Asp
2.515AspAla: 2.515 ± 1.95
0.838AspCys: 0.838 ± 0.849
3.353AspAsp: 3.353 ± 1.209
1.676AspGlu: 1.676 ± 1.697
3.353AspPhe: 3.353 ± 1.444
3.353AspGly: 3.353 ± 2.6
0.0AspHis: 0.0 ± 0.0
3.353AspIle: 3.353 ± 1.209
4.191AspLys: 4.191 ± 1.662
1.676AspLeu: 1.676 ± 1.401
3.353AspMet: 3.353 ± 2.298
4.191AspAsn: 4.191 ± 2.317
1.676AspPro: 1.676 ± 0.954
1.676AspGln: 1.676 ± 1.343
3.353AspArg: 3.353 ± 2.187
3.353AspSer: 3.353 ± 1.201
2.515AspThr: 2.515 ± 0.968
5.029AspVal: 5.029 ± 1.76
2.515AspTrp: 2.515 ± 1.213
1.676AspTyr: 1.676 ± 0.979
0.0AspXaa: 0.0 ± 0.0
Glu
6.706GluAla: 6.706 ± 2.842
0.0GluCys: 0.0 ± 0.0
3.353GluAsp: 3.353 ± 1.159
8.382GluGlu: 8.382 ± 6.794
0.0GluPhe: 0.0 ± 0.0
2.515GluGly: 2.515 ± 1.219
0.0GluHis: 0.0 ± 0.0
8.382GluIle: 8.382 ± 3.172
4.191GluLys: 4.191 ± 2.484
0.838GluLeu: 0.838 ± 1.015
0.0GluMet: 0.0 ± 0.0
1.676GluAsn: 1.676 ± 0.765
0.838GluPro: 0.838 ± 0.849
1.676GluGln: 1.676 ± 1.482
1.676GluArg: 1.676 ± 1.134
2.515GluSer: 2.515 ± 1.777
3.353GluThr: 3.353 ± 1.835
3.353GluVal: 3.353 ± 3.028
1.676GluTrp: 1.676 ± 1.3
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
0.0PheCys: 0.0 ± 0.0
3.353PheAsp: 3.353 ± 1.53
2.515PheGlu: 2.515 ± 1.383
0.838PhePhe: 0.838 ± 0.849
1.676PheGly: 1.676 ± 0.765
1.676PheHis: 1.676 ± 0.979
2.515PheIle: 2.515 ± 0.945
2.515PheLys: 2.515 ± 1.357
7.544PheLeu: 7.544 ± 3.067
0.0PheMet: 0.0 ± 0.0
1.676PheAsn: 1.676 ± 2.031
2.515PhePro: 2.515 ± 0.984
5.029PheGln: 5.029 ± 2.367
3.353PheArg: 3.353 ± 1.444
3.353PheSer: 3.353 ± 1.864
1.676PheThr: 1.676 ± 0.956
1.676PheVal: 1.676 ± 1.054
0.838PheTrp: 0.838 ± 0.762
1.676PheTyr: 1.676 ± 1.12
0.0PheXaa: 0.0 ± 0.0
Gly
2.515GlyAla: 2.515 ± 1.198
0.0GlyCys: 0.0 ± 0.0
5.029GlyAsp: 5.029 ± 1.512
1.676GlyGlu: 1.676 ± 1.909
0.838GlyPhe: 0.838 ± 0.849
5.029GlyGly: 5.029 ± 2.762
0.838GlyHis: 0.838 ± 0.65
3.353GlyIle: 3.353 ± 1.462
4.191GlyLys: 4.191 ± 1.902
2.515GlyLeu: 2.515 ± 1.815
0.838GlyMet: 0.838 ± 0.762
2.515GlyAsn: 2.515 ± 0.917
2.515GlyPro: 2.515 ± 1.361
2.515GlyGln: 2.515 ± 1.198
0.838GlyArg: 0.838 ± 0.65
8.382GlySer: 8.382 ± 2.564
5.868GlyThr: 5.868 ± 2.126
1.676GlyVal: 1.676 ± 1.069
0.0GlyTrp: 0.0 ± 0.0
0.838GlyTyr: 0.838 ± 0.762
0.0GlyXaa: 0.0 ± 0.0
His
0.838HisAla: 0.838 ± 0.65
0.0HisCys: 0.0 ± 0.0
1.676HisAsp: 1.676 ± 0.956
0.0HisGlu: 0.0 ± 0.0
2.515HisPhe: 2.515 ± 1.312
1.676HisGly: 1.676 ± 1.697
1.676HisHis: 1.676 ± 1.697
0.0HisIle: 0.0 ± 0.0
0.838HisLys: 0.838 ± 1.015
4.191HisLeu: 4.191 ± 1.902
0.0HisMet: 0.0 ± 0.981
3.353HisAsn: 3.353 ± 1.528
2.515HisPro: 2.515 ± 1.406
1.676HisGln: 1.676 ± 0.979
1.676HisArg: 1.676 ± 1.353
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
0.838HisVal: 0.838 ± 1.015
1.676HisTrp: 1.676 ± 0.765
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
1.676IleAla: 1.676 ± 1.196
0.0IleCys: 0.0 ± 0.0
4.191IleAsp: 4.191 ± 1.044
3.353IleGlu: 3.353 ± 1.444
5.029IlePhe: 5.029 ± 1.605
3.353IleGly: 3.353 ± 1.388
1.676IleHis: 1.676 ± 1.147
5.029IleIle: 5.029 ± 2.396
4.191IleLys: 4.191 ± 1.876
5.029IleLeu: 5.029 ± 1.674
0.0IleMet: 0.0 ± 0.0
2.515IleAsn: 2.515 ± 1.204
5.029IlePro: 5.029 ± 1.097
5.029IleGln: 5.029 ± 2.486
3.353IleArg: 3.353 ± 1.209
3.353IleSer: 3.353 ± 1.285
5.029IleThr: 5.029 ± 2.872
2.515IleVal: 2.515 ± 0.974
0.838IleTrp: 0.838 ± 0.762
2.515IleTyr: 2.515 ± 1.239
0.0IleXaa: 0.0 ± 0.0
Lys
2.515LysAla: 2.515 ± 1.198
3.353LysCys: 3.353 ± 2.054
4.191LysAsp: 4.191 ± 1.481
4.191LysGlu: 4.191 ± 1.464
0.838LysPhe: 0.838 ± 0.762
2.515LysGly: 2.515 ± 1.361
5.029LysHis: 5.029 ± 2.099
0.838LysIle: 0.838 ± 0.849
7.544LysLys: 7.544 ± 4.55
6.706LysLeu: 6.706 ± 1.909
1.676LysMet: 1.676 ± 0.765
3.353LysAsn: 3.353 ± 1.207
3.353LysPro: 3.353 ± 1.209
1.676LysGln: 1.676 ± 0.979
3.353LysArg: 3.353 ± 1.622
5.029LysSer: 5.029 ± 2.397
2.515LysThr: 2.515 ± 1.397
5.029LysVal: 5.029 ± 1.926
0.838LysTrp: 0.838 ± 0.762
5.029LysTyr: 5.029 ± 2.026
0.0LysXaa: 0.0 ± 0.0
Leu
1.676LeuAla: 1.676 ± 1.909
1.676LeuCys: 1.676 ± 1.069
3.353LeuAsp: 3.353 ± 1.525
5.029LeuGlu: 5.029 ± 1.456
5.029LeuPhe: 5.029 ± 2.526
2.515LeuGly: 2.515 ± 0.984
3.353LeuHis: 3.353 ± 1.528
3.353LeuIle: 3.353 ± 1.525
9.22LeuLys: 9.22 ± 3.032
5.868LeuLeu: 5.868 ± 2.536
3.353LeuMet: 3.353 ± 1.441
6.706LeuAsn: 6.706 ± 2.104
5.029LeuPro: 5.029 ± 1.671
3.353LeuGln: 3.353 ± 1.316
3.353LeuArg: 3.353 ± 2.706
7.544LeuSer: 7.544 ± 3.353
2.515LeuThr: 2.515 ± 1.239
0.0LeuVal: 0.0 ± 0.0
1.676LeuTrp: 1.676 ± 1.054
5.868LeuTyr: 5.868 ± 2.625
0.0LeuXaa: 0.0 ± 0.0
Met
0.838MetAla: 0.838 ± 0.762
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.838MetGlu: 0.838 ± 0.955
0.0MetPhe: 0.0 ± 0.0
2.515MetGly: 2.515 ± 1.466
0.0MetHis: 0.0 ± 0.0
0.838MetIle: 0.838 ± 0.762
2.515MetLys: 2.515 ± 1.132
2.515MetLeu: 2.515 ± 1.655
1.676MetMet: 1.676 ± 1.554
1.676MetAsn: 1.676 ± 1.524
2.515MetPro: 2.515 ± 1.381
0.838MetGln: 0.838 ± 1.075
2.515MetArg: 2.515 ± 1.644
1.676MetSer: 1.676 ± 1.524
2.515MetThr: 2.515 ± 2.014
1.676MetVal: 1.676 ± 1.282
0.0MetTrp: 0.0 ± 0.0
1.676MetTyr: 1.676 ± 1.524
0.0MetXaa: 0.0 ± 0.0
Asn
2.515AsnAla: 2.515 ± 1.198
0.838AsnCys: 0.838 ± 0.762
2.515AsnAsp: 2.515 ± 0.917
1.676AsnGlu: 1.676 ± 0.765
3.353AsnPhe: 3.353 ± 1.375
1.676AsnGly: 1.676 ± 1.524
1.676AsnHis: 1.676 ± 2.031
4.191AsnIle: 4.191 ± 1.078
0.0AsnLys: 0.0 ± 0.0
6.706AsnLeu: 6.706 ± 1.816
2.515AsnMet: 2.515 ± 1.56
4.191AsnAsn: 4.191 ± 2.318
3.353AsnPro: 3.353 ± 1.207
1.676AsnGln: 1.676 ± 1.196
1.676AsnArg: 1.676 ± 1.157
5.029AsnSer: 5.029 ± 2.249
4.191AsnThr: 4.191 ± 2.318
3.353AsnVal: 3.353 ± 1.462
0.838AsnTrp: 0.838 ± 0.849
4.191AsnTyr: 4.191 ± 2.114
0.0AsnXaa: 0.0 ± 0.0
Pro
3.353ProAla: 3.353 ± 1.658
1.676ProCys: 1.676 ± 0.956
4.191ProAsp: 4.191 ± 1.151
3.353ProGlu: 3.353 ± 1.419
4.191ProPhe: 4.191 ± 1.073
2.515ProGly: 2.515 ± 1.687
0.838ProHis: 0.838 ± 0.65
0.838ProIle: 0.838 ± 1.015
1.676ProLys: 1.676 ± 1.524
3.353ProLeu: 3.353 ± 1.406
3.353ProMet: 3.353 ± 1.55
4.191ProAsn: 4.191 ± 1.427
4.191ProPro: 4.191 ± 1.943
5.029ProGln: 5.029 ± 2.507
5.029ProArg: 5.029 ± 2.455
9.22ProSer: 9.22 ± 2.419
2.515ProThr: 2.515 ± 1.444
0.838ProVal: 0.838 ± 0.762
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.515GlnAla: 2.515 ± 1.444
0.0GlnCys: 0.0 ± 0.0
3.353GlnAsp: 3.353 ± 1.34
2.515GlnGlu: 2.515 ± 1.361
3.353GlnPhe: 3.353 ± 1.958
3.353GlnGly: 3.353 ± 1.209
0.0GlnHis: 0.0 ± 0.0
2.515GlnIle: 2.515 ± 1.397
4.191GlnLys: 4.191 ± 2.025
2.515GlnLeu: 2.515 ± 2.025
0.838GlnMet: 0.838 ± 1.015
1.676GlnAsn: 1.676 ± 1.069
4.191GlnPro: 4.191 ± 3.321
3.353GlnGln: 3.353 ± 2.34
1.676GlnArg: 1.676 ± 0.765
5.029GlnSer: 5.029 ± 1.787
2.515GlnThr: 2.515 ± 1.397
4.191GlnVal: 4.191 ± 1.414
0.838GlnTrp: 0.838 ± 0.762
3.353GlnTyr: 3.353 ± 1.207
0.0GlnXaa: 0.0 ± 0.0
Arg
0.838ArgAla: 0.838 ± 0.762
2.515ArgCys: 2.515 ± 0.984
1.676ArgAsp: 1.676 ± 1.12
3.353ArgGlu: 3.353 ± 1.406
2.515ArgPhe: 2.515 ± 2.014
2.515ArgGly: 2.515 ± 1.762
0.838ArgHis: 0.838 ± 0.65
1.676ArgIle: 1.676 ± 1.032
5.029ArgLys: 5.029 ± 2.235
0.838ArgLeu: 0.838 ± 1.075
0.0ArgMet: 0.0 ± 0.0
3.353ArgAsn: 3.353 ± 1.388
3.353ArgPro: 3.353 ± 1.592
1.676ArgGln: 1.676 ± 1.282
6.706ArgArg: 6.706 ± 4.016
3.353ArgSer: 3.353 ± 1.951
6.706ArgThr: 6.706 ± 2.854
3.353ArgVal: 3.353 ± 1.444
0.838ArgTrp: 0.838 ± 0.955
4.191ArgTyr: 4.191 ± 1.347
0.0ArgXaa: 0.0 ± 0.0
Ser
2.515SerAla: 2.515 ± 1.198
0.838SerCys: 0.838 ± 0.955
2.515SerAsp: 2.515 ± 1.346
4.191SerGlu: 4.191 ± 1.723
1.676SerPhe: 1.676 ± 1.3
3.353SerGly: 3.353 ± 1.908
1.676SerHis: 1.676 ± 1.196
7.544SerIle: 7.544 ± 3.489
2.515SerLys: 2.515 ± 2.362
10.059SerLeu: 10.059 ± 3.282
0.838SerMet: 0.838 ± 0.762
1.676SerAsn: 1.676 ± 1.169
5.029SerPro: 5.029 ± 2.415
3.353SerGln: 3.353 ± 1.53
5.868SerArg: 5.868 ± 2.85
12.573SerSer: 12.573 ± 3.387
11.735SerThr: 11.735 ± 4.763
4.191SerVal: 4.191 ± 2.804
0.838SerTrp: 0.838 ± 0.65
1.676SerTyr: 1.676 ± 1.3
0.0SerXaa: 0.0 ± 0.0
Thr
1.676ThrAla: 1.676 ± 1.054
0.838ThrCys: 0.838 ± 0.955
1.676ThrAsp: 1.676 ± 1.134
3.353ThrGlu: 3.353 ± 1.602
3.353ThrPhe: 3.353 ± 1.887
6.706ThrGly: 6.706 ± 2.18
1.676ThrHis: 1.676 ± 0.765
5.868ThrIle: 5.868 ± 2.061
3.353ThrLys: 3.353 ± 2.298
5.868ThrLeu: 5.868 ± 1.821
1.676ThrMet: 1.676 ± 1.524
3.353ThrAsn: 3.353 ± 1.104
5.029ThrPro: 5.029 ± 2.444
2.515ThrGln: 2.515 ± 0.917
1.676ThrArg: 1.676 ± 1.12
7.544ThrSer: 7.544 ± 5.643
4.191ThrThr: 4.191 ± 2.23
1.676ThrVal: 1.676 ± 1.169
0.0ThrTrp: 0.0 ± 0.0
5.029ThrTyr: 5.029 ± 1.99
0.0ThrXaa: 0.0 ± 0.0
Val
0.0ValAla: 0.0 ± 0.0
0.838ValCys: 0.838 ± 0.924
5.029ValAsp: 5.029 ± 2.392
0.0ValGlu: 0.0 ± 0.0
2.515ValPhe: 2.515 ± 1.39
0.838ValGly: 0.838 ± 0.762
0.838ValHis: 0.838 ± 1.075
5.029ValIle: 5.029 ± 2.397
5.868ValLys: 5.868 ± 1.862
3.353ValLeu: 3.353 ± 1.926
1.676ValMet: 1.676 ± 1.198
4.191ValAsn: 4.191 ± 1.676
2.515ValPro: 2.515 ± 1.239
3.353ValGln: 3.353 ± 1.042
1.676ValArg: 1.676 ± 1.032
1.676ValSer: 1.676 ± 0.979
2.515ValThr: 2.515 ± 2.285
2.515ValVal: 2.515 ± 1.678
0.0ValTrp: 0.0 ± 0.0
1.676ValTyr: 1.676 ± 1.343
0.0ValXaa: 0.0 ± 0.0
Trp
1.676TrpAla: 1.676 ± 1.3
0.838TrpCys: 0.838 ± 0.955
0.0TrpAsp: 0.0 ± 0.0
0.838TrpGlu: 0.838 ± 0.762
0.838TrpPhe: 0.838 ± 1.015
0.838TrpGly: 0.838 ± 0.65
0.0TrpHis: 0.0 ± 0.0
2.515TrpIle: 2.515 ± 1.204
1.676TrpLys: 1.676 ± 0.765
0.838TrpLeu: 0.838 ± 0.924
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.838TrpPro: 0.838 ± 0.762
0.838TrpGln: 0.838 ± 0.65
2.515TrpArg: 2.515 ± 1.603
0.0TrpSer: 0.0 ± 0.0
0.838TrpThr: 0.838 ± 0.65
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.838TyrAla: 0.838 ± 0.762
0.0TyrCys: 0.0 ± 0.0
2.515TyrAsp: 2.515 ± 1.227
1.676TyrGlu: 1.676 ± 1.157
2.515TyrPhe: 2.515 ± 0.974
3.353TyrGly: 3.353 ± 1.042
2.515TyrHis: 2.515 ± 1.198
2.515TyrIle: 2.515 ± 1.95
2.515TyrLys: 2.515 ± 1.711
0.838TyrLeu: 0.838 ± 0.65
2.515TyrMet: 2.515 ± 1.539
3.353TyrAsn: 3.353 ± 1.958
3.353TyrPro: 3.353 ± 1.316
3.353TyrGln: 3.353 ± 1.207
1.676TyrArg: 1.676 ± 1.032
0.838TyrSer: 0.838 ± 1.015
3.353TyrThr: 3.353 ± 1.739
3.353TyrVal: 3.353 ± 1.462
0.0TyrTrp: 0.0 ± 0.0
1.676TyrTyr: 1.676 ± 1.147
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1194 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski