Neisseria weaveri

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2011 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A448VPT1|A0A448VPT1_9NEIS 50S ribosomal protein L19 OS=Neisseria weaveri OX=28091 GN=rplS PE=3 SV=1
MM1 pKa = 7.63SDD3 pKa = 3.37EE4 pKa = 4.26SPIIFTEE11 pKa = 4.37SCCAKK16 pKa = 10.45VADD19 pKa = 6.17LIAEE23 pKa = 4.23EE24 pKa = 4.56NNPDD28 pKa = 3.05LKK30 pKa = 11.19LRR32 pKa = 11.84VFVNGGGCSGFQYY45 pKa = 10.94GFTFDD50 pKa = 5.34EE51 pKa = 4.5ITNDD55 pKa = 3.97DD56 pKa = 3.87DD57 pKa = 6.11FEE59 pKa = 4.65IKK61 pKa = 10.2KK62 pKa = 10.71DD63 pKa = 3.46GLTFLVDD70 pKa = 3.61PMSYY74 pKa = 10.26QYY76 pKa = 11.24LIGAEE81 pKa = 3.7IDD83 pKa = 3.78YY84 pKa = 10.37TEE86 pKa = 4.57SLQGSQFVIRR96 pKa = 11.84NPNATTTCGCGSSFSVV112 pKa = 3.54

Molecular weight: 12.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S4Z9W3|A0A3S4Z9W3_9NEIS Histidinol-phosphate aminotransferase OS=Neisseria weaveri OX=28091 GN=hisC PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.43RR14 pKa = 11.84THH16 pKa = 5.89GFLVRR21 pKa = 11.84SKK23 pKa = 9.38TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2011

0

2011

633418

30

3743

315.0

34.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.0 ± 0.071

0.957 ± 0.02

5.247 ± 0.062

6.189 ± 0.055

3.913 ± 0.049

7.51 ± 0.076

2.26 ± 0.029

5.768 ± 0.042

5.482 ± 0.051

10.129 ± 0.1

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.505 ± 0.034

4.261 ± 0.063

4.195 ± 0.044

4.354 ± 0.044

5.106 ± 0.052

5.66 ± 0.047

5.206 ± 0.074

7.066 ± 0.06

1.265 ± 0.026

2.927 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski