Paraperlucidibaca baekdonensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Paraperlucidibaca

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2146 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3E0H8H3|A0A3E0H8H3_9GAMM LytTR family two component transcriptional regulator OS=Paraperlucidibaca baekdonensis OX=748120 GN=DFR26_0237 PE=4 SV=1
MM1 pKa = 7.1SQLPAEE7 pKa = 4.61LKK9 pKa = 10.34YY10 pKa = 10.61AASHH14 pKa = 5.17EE15 pKa = 4.21WARR18 pKa = 11.84LDD20 pKa = 3.64GDD22 pKa = 4.09VVTVGITDD30 pKa = 4.04HH31 pKa = 6.8AQDD34 pKa = 3.61ALGDD38 pKa = 3.85LVYY41 pKa = 11.09VEE43 pKa = 5.09LPNVGDD49 pKa = 3.85AVSAGQEE56 pKa = 3.86AGVVEE61 pKa = 4.56SVKK64 pKa = 10.59AASDD68 pKa = 3.41IYY70 pKa = 11.21APVSGEE76 pKa = 3.63IIAINDD82 pKa = 3.93ALVDD86 pKa = 3.53APEE89 pKa = 4.18IVNTEE94 pKa = 4.35PYY96 pKa = 10.5AGGWLYY102 pKa = 10.44QIKK105 pKa = 10.37ISDD108 pKa = 3.67AAEE111 pKa = 4.17LGEE114 pKa = 4.19LLSAEE119 pKa = 4.32EE120 pKa = 3.95YY121 pKa = 10.38AAKK124 pKa = 9.78QDD126 pKa = 3.69HH127 pKa = 6.32

Molecular weight: 13.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3E0HA92|A0A3E0HA92_9GAMM Outer membrane protein assembly factor BamD OS=Paraperlucidibaca baekdonensis OX=748120 GN=bamD PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.56RR3 pKa = 11.84TFQPSTIKK11 pKa = 10.33QKK13 pKa = 9.06RR14 pKa = 11.84THH16 pKa = 6.13GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.33NGRR28 pKa = 11.84AVIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.69GRR39 pKa = 11.84KK40 pKa = 8.88RR41 pKa = 11.84LTVV44 pKa = 3.11

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2146

0

2146

709905

30

2355

330.8

36.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.891 ± 0.075

0.977 ± 0.016

5.499 ± 0.036

5.301 ± 0.05

3.548 ± 0.034

7.502 ± 0.049

2.411 ± 0.029

5.147 ± 0.04

3.422 ± 0.042

11.043 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.624 ± 0.029

3.043 ± 0.036

4.71 ± 0.036

4.265 ± 0.036

6.371 ± 0.048

6.039 ± 0.042

5.111 ± 0.038

7.227 ± 0.043

1.436 ± 0.022

2.432 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski