Capybara microvirus Cap3_SP_316

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVR9|A0A4V1FVR9_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_316 OX=2585426 PE=3 SV=1
MM1 pKa = 6.85TTDD4 pKa = 3.26KK5 pKa = 11.08LFYY8 pKa = 10.35IYY10 pKa = 9.74DD11 pKa = 3.9TVSDD15 pKa = 4.32LNLGYY20 pKa = 10.42RR21 pKa = 11.84FYY23 pKa = 10.01PTIGALIRR31 pKa = 11.84SEE33 pKa = 4.41APTISKK39 pKa = 9.19QFPNFEE45 pKa = 4.28TEE47 pKa = 4.03LKK49 pKa = 10.15IIEE52 pKa = 4.47IGSFVSDD59 pKa = 2.93SGYY62 pKa = 10.83DD63 pKa = 3.06ISSFNPLSVLDD74 pKa = 3.97IPLIHH79 pKa = 6.62SWDD82 pKa = 3.75EE83 pKa = 3.83YY84 pKa = 11.16SFQSSEE90 pKa = 4.18TKK92 pKa = 10.18FNKK95 pKa = 9.97

Molecular weight: 10.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4Q1|A0A4P8W4Q1_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_316 OX=2585426 PE=4 SV=1
MM1 pKa = 7.63ICRR4 pKa = 11.84NPIDD8 pKa = 3.75SSNFKK13 pKa = 10.83YY14 pKa = 10.21PIYY17 pKa = 10.11DD18 pKa = 3.27ALGRR22 pKa = 11.84TVKK25 pKa = 10.33VPCNTCLACRR35 pKa = 11.84ANKK38 pKa = 9.3ILNYY42 pKa = 8.69SARR45 pKa = 11.84ISYY48 pKa = 9.83EE49 pKa = 3.61RR50 pKa = 11.84INNPEE55 pKa = 3.9CSFVTFTYY63 pKa = 10.73DD64 pKa = 4.43KK65 pKa = 11.46NHH67 pKa = 6.37LKK69 pKa = 10.96YY70 pKa = 10.9NFGFYY75 pKa = 10.76EE76 pKa = 4.19PTLKK80 pKa = 10.69RR81 pKa = 11.84SDD83 pKa = 3.1LHH85 pKa = 8.49KK86 pKa = 11.13YY87 pKa = 8.29IDD89 pKa = 3.89KK90 pKa = 10.54VRR92 pKa = 11.84HH93 pKa = 5.86LLPKK97 pKa = 10.14DD98 pKa = 3.44VKK100 pKa = 10.45FKK102 pKa = 11.14YY103 pKa = 9.49FASGQYY109 pKa = 10.09GDD111 pKa = 4.05RR112 pKa = 11.84FNRR115 pKa = 11.84PHH117 pKa = 5.7YY118 pKa = 9.7HH119 pKa = 5.55VLFIGLDD126 pKa = 3.43FVKK129 pKa = 10.51YY130 pKa = 10.26YY131 pKa = 11.18KK132 pKa = 10.42FFKK135 pKa = 10.62DD136 pKa = 3.07SWNLGSVDD144 pKa = 4.11VQPMLSGSVQYY155 pKa = 10.63VCSYY159 pKa = 10.59LHH161 pKa = 5.87HH162 pKa = 6.61QKK164 pKa = 10.66FGSDD168 pKa = 3.3SLDD171 pKa = 3.09SQFFDD176 pKa = 3.96NGLDD180 pKa = 3.62EE181 pKa = 5.46PFLSMSPGIGSDD193 pKa = 4.07FYY195 pKa = 10.97LAHH198 pKa = 7.02IFEE201 pKa = 5.45LLNGLPVFYY210 pKa = 10.16GSSSVQVPSYY220 pKa = 10.68YY221 pKa = 9.69RR222 pKa = 11.84RR223 pKa = 11.84KK224 pKa = 9.62YY225 pKa = 10.67LKK227 pKa = 10.5LSQFSLDD234 pKa = 3.88NIRR237 pKa = 11.84DD238 pKa = 3.84SLVLNRR244 pKa = 11.84KK245 pKa = 6.98YY246 pKa = 10.43HH247 pKa = 5.17YY248 pKa = 11.14NSMLEE253 pKa = 3.63AGYY256 pKa = 9.13TDD258 pKa = 3.86FGKK261 pKa = 10.09FVKK264 pKa = 9.66MKK266 pKa = 10.64SEE268 pKa = 3.89QQDD271 pKa = 3.52FQLINSLRR279 pKa = 11.84SRR281 pKa = 11.84GCPISQSYY289 pKa = 10.43LFGNTVYY296 pKa = 10.98SFDD299 pKa = 3.55KK300 pKa = 11.37GFINSLANSALKK312 pKa = 10.58AA313 pKa = 3.66

Molecular weight: 36.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1846

77

650

263.7

29.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.629 ± 0.463

1.138 ± 0.385

7.367 ± 0.616

3.575 ± 0.433

7.259 ± 0.542

5.525 ± 0.53

1.463 ± 0.333

6.013 ± 0.613

5.742 ± 0.7

9.751 ± 0.4

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.138 ± 0.143

7.638 ± 0.388

4.28 ± 0.882

3.359 ± 0.375

4.009 ± 0.21

13.868 ± 0.935

3.738 ± 0.647

4.388 ± 0.529

0.704 ± 0.162

5.417 ± 0.679
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski