Acidianus rod-shaped virus 1

Taxonomy: Viruses; Adnaviria; Zilligvirae; Taleaviricota; Tokiviricetes; Ligamenvirales; Rudiviridae; Itarudivirus; Itarudivirus ARV1

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 38 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q50I58|Q50I58_9VIRU Uncharacterized protein OS=Acidianus rod-shaped virus 1 OX=309181 PE=4 SV=1
MM1 pKa = 7.99DD2 pKa = 5.74EE3 pKa = 5.12DD4 pKa = 4.14SQIPTCFDD12 pKa = 3.0ILKK15 pKa = 10.65SNGYY19 pKa = 7.69NLKK22 pKa = 10.41GYY24 pKa = 9.84SQDD27 pKa = 3.89TILLLQTAHH36 pKa = 6.96GSFEE40 pKa = 4.0EE41 pKa = 4.76CEE43 pKa = 4.25TYY45 pKa = 11.25LFMLEE50 pKa = 3.9IQYY53 pKa = 11.01GG54 pKa = 3.5

Molecular weight: 6.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q50I31|Q50I31_9VIRU Uncharacterized protein OS=Acidianus rod-shaped virus 1 OX=309181 PE=4 SV=1
MM1 pKa = 7.77YY2 pKa = 10.6FMGCWQVGVSGFRR15 pKa = 11.84QVRR18 pKa = 11.84VQKK21 pKa = 10.72IFGEE25 pKa = 4.26KK26 pKa = 9.11CSAVITVFRR35 pKa = 11.84TFFTQTRR42 pKa = 11.84VII44 pKa = 3.9

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

38

0

38

7204

44

1115

189.6

21.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.455 ± 0.417

1.11 ± 0.251

5.261 ± 0.343

5.303 ± 0.497

5.4 ± 0.432

4.775 ± 0.258

1.61 ± 0.203

8.079 ± 0.391

6.108 ± 0.515

9.273 ± 0.562

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.249 ± 0.175

5.677 ± 0.412

4.275 ± 0.374

4.72 ± 0.368

3.47 ± 0.321

7.482 ± 0.56

5.858 ± 0.295

6.621 ± 0.332

0.93 ± 0.154

5.344 ± 0.352
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski